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[181006_at]

Description Y53H1B.5 /REP_DB=WormBase Gene ID /WP=CE24432 /TR=Q9U248 /GB=CAB60413.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 5.1
(-3)
A 		28.5
(-0.1)
A 		4.8
(-3)
A 		53.6
(3)
A 		49
B 7.9
(3)
A 		5.6
(0.2)
A 		2.9
(-3)
A 		5.1
(-0.4)
A 		5
C 1.7
(-3)
A 		6.4
(-2.6)
A 		1.3
(-3)
A 		84.9
(3)
P 		84
avr 4.9
(-2.7) 		13.5
(-1.6) 		3
(-3) 		47.9
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 2.7
(-2.1)
A 		5.8
(0.7)
A 		8.4
(3)
A 		3.6
(-1.3)
A 		3.4
(-1.5)
A 		1.7
(-3)
A 		7
B 5.7
(3)
A 		2.6
(-1.2)
A 		1.3
(-3)
A 		1.6
(-2.6)
A 		2.1
(-1.9)
A 		1.7
(-2.5)
A 		4
C 3.3
(-2.5)
A 		9.9
(-0.9)
A 		11
(-0.6)
A 		25.8
(3)
A 		1.2
(-3)
A 		2.1
(-2.8)
A 		25
avr 3.9
(-1.5) 		6.1
(0) 		6.9
(0.6) 		10.3
(3) 		2.2
(-2.7) 		1.8
(-3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.9
(-2.4)
A 		6.2
(1.5)
A 		1.3
(-3)
A 		7.8
(3)
A 		7
B 2.5
(3)
A 		1.4
(-0.7)
A 		0.7
(-3)
A 		1.1
(-1.7)
A 		2
C 0.6
(-3)
A 		1.8
(-2.4)
A 		0.5
(-3)
A 		14.3
(3)
P 		14
avr 1.7
(-2.2) 		3.1
(-1) 		0.8
(-3) 		7.7
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.5
(-2.6)
A 		2.1
(3)
A 		1.8
(1.9)
A 		0.9
(-1.2)
A 		1
(-0.9)
A 		0.4
(-3)
A 		2
B 2
(3)
A 		0.8
(-1.2)
A 		0.3
(-3)
A 		0.4
(-2.6)
A 		0.9
(-0.9)
A 		0.6
(-1.9)
A 		2
C 1.2
(-2)
A 		3
(0.3)
A 		2.8
(0)
A 		5.2
(3)
A 		0.4
(-3)
A 		0.7
(-2.6)
A 		5
avr 1.2
(-0.8) 		2
(2.3) 		1.6
(0.8) 		2.2
(3) 		0.8
(-2.3) 		0.6
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181006_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.403
Sequence Type Exemplar sequence
Representative Public ID Y53H1B.5 NCBI
Target Description Y53H1B.5 /REP_DB=WormBase Gene ID /WP=CE24432 /TR=Q9U248 /GB=CAB60413.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y53H1B.5 ENSEMBL cdna:known chromosome:CEL140:I:11307405:11307703:1 gene:Y53H1B.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11307335-11307634(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y53H1B.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39766 Hypothetical protein C39B5.1 [Caenorhabditis elegans] ref|NP_497520.2| Serpentine Receptor, class Z family member (srz-56) [Caenorhabditis elegans] 1.0E-11
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
Y53H1B.5 1 23-45
Sequence
Target Sequence 
>C. ELEGANS:181006_AT
gaacttcaccgattttttcgaggatccgaacgcactaaaacaaatttctgggtacgcaaa
tcgaattttatttttatttcttggtgttttttggggccttcatattttaatcactccgtt
gtatatgttcgttcataagaaaaatcgcaagcgcgaccaaaaagttgagcttcatcgttc
gattcccatatatccacttaccagtcattttcacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTTCACCGATTTTTTCGAGGAT 659 349 15 Antisense
TCGAGGATCCGAACGCACTAAAACA 504 601 32 Antisense
ACAAATTTCTGGGTACGCAAATCGA 314 111 54 Antisense
TTGGTGTTTTTTGGGGCCTTCATAT 537 703 95 Antisense
GGGGCCTTCATATTTTAATCACTCC 512 497 107 Antisense
CATATTTTAATCACTCCGTTGTATA 667 213 115 Antisense
ACTCCGTTGTATATGTTCGTTCATA 190 99 127 Antisense
ATCGCAAGCGCGACCAAAAAGTTGA 219 37 158 Antisense
AAGTTGAGCTTCATCGTTCGATTCC 574 155 176 Antisense
GTTCGATTCCCATATATCCACTTAC 11 443 191 Antisense
ATCCACTTACCAGTCATTTTCACAA 687 39 206 Antisense
Sequence Source Affymetrix Proprietary Database