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[181005_at]

Description T02H6.4 /REP_DB=WormBase Gene ID /WP=CE21140 /TR=Q9N5E6 /GB=AAF39961.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 08      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 6.8
(-2)
A 		2.8
(-3)
A 		11.1
(-0.9)
A 		26.2
(3)
A 		23
B 2.2
(-3)
A 		6.9
(-1.9)
A 		16.6
(0.5)
A 		27.1
(3)
A 		25
C 3
(-3)
A 		5
(-0.7)
A 		6.9
(1.4)
A 		8.3
(3)
A 		5
avr 4
(-3) 		4.9
(-2.7) 		11.5
(-0.3) 		20.5
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 3.7
(-1.8)
A 		12.5
(3)
A 		1.4
(-3)
A 		5.8
(-0.6)
A 		3.6
(-1.8)
A 		1.4
(-3)
A 		11
B 8.1
(3)
A 		6
(0.3)
A 		6.3
(0.7)
A 		6.2
(0.6)
A 		6.3
(0.7)
A 		3.4
(-3)
A 		5
C 13.2
(-0.6)
A 		3
(-2.8)
A 		2.2
(-2.9)
A 		30.8
(3)
A 		6
(-2.1)
A 		1.8
(-3)
A 		29
avr 8.3
(0) 		7.2
(-0.5) 		3.3
(-2.5) 		14.3
(3) 		5.3
(-1.5) 		2.2
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.5
(0.6)
A 		0.6
(-3)
A 		2.9
(1.3)
A 		3.8
(3)
A 		3
B 0.7
(-3)
A 		1.7
(-1.8)
A 		3.8
(0.6)
A 		5.8
(3)
A 		5
C 1
(-3)
A 		1.4
(-1.3)
A 		2.4
(3)
A 		1.4
(-1.3)
A 		1
avr 1.4
(-2.5) 		1.2
(-3) 		3
(1.3) 		3.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.7
(-2.4)
A 		4.5
(3)
A 		0.3
(-3)
A 		1.5
(-1.3)
A 		1.1
(-1.9)
A 		0.3
(-3)
A 		4
B 2.8
(3)
A 		2
(-0.2)
A 		1.5
(-2.2)
A 		1.6
(-1.8)
A 		2.5
(1.8)
A 		1.3
(-3)
A 		2
C 4.9
(1.6)
A 		0.9
(-2.7)
A 		0.6
(-3)
A 		6.2
(3)
A 		1.9
(-1.6)
A 		0.6
(-3)
A 		6
avr 2.8
(2.3) 		2.5
(1.5) 		0.8
(-2.8) 		3.1
(3) 		1.8
(-0.3) 		0.7
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181005_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4837
Sequence Type Exemplar sequence
Representative Public ID T02H6.4 NCBI
Target Description T02H6.4 /REP_DB=WormBase Gene ID /WP=CE21140 /TR=Q9N5E6 /GB=AAF39961.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061392(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061392 NCBI Caenorhabditis elegans T02H6.4 (T02H6.4) mRNA, complete cds. 11/11 A 
GENEFINDER00000003371 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:690055:691090:1 11/11 None
T02H6.4 ENSEMBL cdna:known chromosome:CEL140:II:690055:691090:1 gene:T02H6.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003366 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:690054-691090(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T02H6.4
Entrez Gene 188004 Entrez gene
SwissProt Q9N5E6 EMBL-EBI
WormBase CE21140 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39961 Hypothetical protein T02H6.4 [Caenorhabditis elegans] ref|NP_493793.1| T02H6.4 [Caenorhabditis elegans] 1.0E-109
blast AAF39966 Hypothetical protein T02H6.7 [Caenorhabditis elegans] ref|NP_493790.1| T02H6.7 [Caenorhabditis elegans] 2.0E-86
blast AAA96168 Hypothetical protein R105.1 [Caenorhabditis elegans] ref|NP_500601.1| R105.1 [Caenorhabditis elegans] 1.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 9.5E-24
Sequence
Target Sequence 
>C. ELEGANS:181005_AT
ctgtaatccaccagacggagtctccaacaacgccatttccaacaagcttgttataaagcc
agaactcccatttggacactggagagagattcaatggtgcccgaatggaactgttatcat
cggaatacaaaccaaatctgaccgtggtagaattgataaagctggaatcaccaacttcgc
tgcaaagtgcggacgtccggaagtgaggcaccacgttttcaagatctgttcaaaaacaag
atctacgaaaacaagatctaccaaaacaagatctacgttttcaggatctggcaccgtgcc
aactgcggttttctctacgcgcgcgtacgcgacgcgtgttgctaagcagaatctcgatac
tt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGTAATCCACCAGACGGAGTCTCC 239 239 186 Antisense
CAGACGGAGTCTCCAACAACGCCAT 280 205 197 Antisense
GTTATAAAGCCAGAACTCCCATTTG 552 447 235 Antisense
AAGCCAGAACTCCCATTTGGACACT 265 149 241 Antisense
GAACTCCCATTTGGACACTGGAGAG 255 349 247 Antisense
GAATCACCAACTTCGCTGCAAAGTG 709 327 350 Antisense
CTTCGCTGCAAAGTGCGGACGTCCG 15 221 360 Antisense
GACGTCCGGAAGTGAGGCACCACGT 87 97 377 Antisense
GCGCGTACGCGACGCGTGTTGCTAA 550 287 506 Antisense
TACGCGACGCGTGTTGCTAAGCAGA 371 649 511 Antisense
GTTGCTAAGCAGAATCTCGATACTT 634 437 523 Antisense
Sequence Source Affymetrix Proprietary Database