[Home] | [Total List]

[181004_s_at]

Description T09B4.1 /REP_DB=WormBase Gene ID /WP=CE13457 /TR=O02164 /GB=AAB53004.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 94      6grp_total > 97      4grp_total > 58      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 308.2
(1.4)
P 		291.8
(0.4)
P 		334.9
(3)
P 		234.5
(-3)
P 		100
B 239.3
(0.4)
P 		259.8
(2.8)
P 		261.7
(3)
P 		210.2
(-3)
P 		52
C 302.6
(-2.3)
P 		412
(3)
P 		357.9
(0.4)
P 		288.7
(-3)
P 		123
avr 283.4
(0) 		321.2
(3) 		318.2
(2.8) 		244.5
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 944
1 2 3 4 5 6 range
A 338.6
(-3)
P 		362
(-2.8)
P 		348.5
(-2.9)
P 		446.2
(-2.3)
P 		878.8
(0.6)
P 		1248
(3)
P 		909
B 326.2
(-2.8)
P 		383.7
(-2.4)
P 		303.8
(-3)
P 		470
(-1.7)
P 		814
(0.9)
P 		1089
(3)
P 		785
C 335.5
(-3)
P 		333.1
(-3)
P 		402.5
(-2.4)
P 		585.5
(-1)
P 		850.7
(1.2)
P 		1075.2
(3)
P 		742
avr 333.4
(-3) 		359.6
(-2.8) 		351.6
(-2.9) 		500.6
(-1.8) 		847.8
(0.8) 		1137.4
(3) 		804
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 112.2
(3)
P 		63.4
(-0.8)
P 		87.5
(1.1)
P 		34.3
(-3)
P 		78
B 76.3
(3)
P 		64.2
(0.7)
P 		60.6
(0)
P 		44.8
(-3)
P 		32
C 100.2
(1.1)
P 		118.5
(2.5)
P 		124.8
(3)
P 		48.7
(-3)
P 		76
avr 96.2
(3) 		82
(1.4) 		91
(2.4) 		42.6
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 344
1 2 3 4 5 6 range
A 62.4
(-3)
P 		128.7
(-1.4)
P 		75.9
(-2.7)
P 		113.2
(-1.7)
P 		265.2
(2)
P 		303.8
(3)
P 		241
B 113.5
(-2.3)
P 		127.7
(-2)
P 		73.8
(-3)
P 		124.5
(-2.1)
P 		330.7
(1.6)
P 		406.1
(3)
P 		332
C 124.3
(-2.5)
P 		101.7
(-3)
P 		102.4
(-3)
P 		117.7
(-2.6)
P 		275.3
(1)
P 		359.9
(3)
P 		258
avr 100.1
(-2.6) 		119.4
(-2.2) 		84
(-3) 		118.5
(-2.2) 		290.4
(1.5) 		356.6
(3) 		273
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181004_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.966
Sequence Type Exemplar sequence
Representative Public ID T09B4.1 NCBI
Target Description T09B4.1 /REP_DB=WormBase Gene ID /WP=CE13457 /TR=O02164 /GB=AAB53004.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059382(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059382 NCBI Caenorhabditis elegans T09B4.1 (T09B4.1) mRNA, complete cds. 11/11 None
T09B4.1 ENSEMBL cdna:known chromosome:CEL140:I:6193597:6196194:1 gene:T09B4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6193526-6195879(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T09B4.1
Entrez Gene 172305 Entrez gene
SwissProt O02164 EMBL-EBI
WormBase CE13457 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264393_AT expressed protein at
ATGENOME1:13952_AT expressed protein at
CANINE:1598460_S_AT similar to phosphatidylinositol glycan class V cfa
CANINE:1598459_AT similar to phosphatidylinositol glycan class V cfa
CANINE:1587670_AT similar to phosphatidylinositol glycan class V cfa
CANINE_2:CFA.10431.1.A1_A_AT similar to phosphatidylinositol glycan class V cfa
CANINE_2:CFAAFFX.19093.1.S1_AT similar to phosphatidylinositol glycan class V cfa
DROSOPHILA_2:1628922_S_AT vegetable dm
DROSGENOME1:153335_AT vegetable dm
CHICKEN:GGAAFFX.199.1.S1_AT similar to RIKEN cDNA D430024F16 gene gga
HU35KSUBA:AA488793_AT phosphatidylinositol glycan, class V hs
HG-U133_PLUS_2:219238_AT phosphatidylinositol glycan, class V hs
HG-U133A:219238_AT phosphatidylinositol glycan, class V hs
HG-U133A_2:219238_AT phosphatidylinositol glycan, class V hs
HU35KSUBA:RC_AA489009_AT phosphatidylinositol glycan, class V hs
U133_X3P:G8923441_3P_S_AT phosphatidylinositol glycan, class V hs
U133_X3P:G8923441_3P_AT phosphatidylinositol glycan, class V hs
HG-U133A_2:51146_AT phosphatidylinositol glycan, class V hs
HG-U133_PLUS_2:51146_AT phosphatidylinositol glycan, class V hs
HG-U133A:51146_AT phosphatidylinositol glycan, class V hs
HG-U95B:51146_AT phosphatidylinositol glycan, class V hs
HG-U133_PLUS_2:240375_AT Phosphatidylinositol glycan, class V hs
HG-U133B:240375_AT Phosphatidylinositol glycan, class V hs
HG-U95D:78038_AT Phosphatidylinositol glycan, class V hs
U133_X3P:HS.131633.0.A1_3P_AT Phosphatidylinositol glycan, class V hs
MG-U74CV2:137557_AT phosphatidylinositol glycan, class V mm
MOE430B:1455075_AT phosphatidylinositol glycan, class V mm
MOUSE430_2:1455075_AT phosphatidylinositol glycan, class V mm
MOE430B:1437663_AT phosphatidylinositol glycan, class V mm
MOUSE430_2:1437663_AT phosphatidylinositol glycan, class V mm
MU19KSUBC:TC41090_AT Phosphatidylinositol glycan, class V, mRNA (cDNA clone MGC:62865 IMAGE:6528864) mm
RAE230B:1391664_AT similar to hypothetical protein FLJ20477 (predicted) rn
RAT230_2:1391664_AT similar to hypothetical protein FLJ20477 (predicted) rn
RAE230B:1395867_AT Similar to hypothetical protein FLJ20477 (predicted) rn
RAT230_2:1395867_AT Similar to hypothetical protein FLJ20477 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAB53004 Hypothetical protein T09B4.1 [Caenorhabditis elegans] ref|NP_491783.1| T09B4.1 [Caenorhabditis elegans] 0.0
blast CAE67131 Hypothetical protein CBG12553 [Caenorhabditis briggsae] 0.0
blast CAG00037 unnamed protein product [Tetraodon nigroviridis] 2.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR007315 EMBL-EBI Protein of unknown function DUF409 4.4E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491783.1 9 136-155,240-262,275-297,302-324,336-358,422-444,524-541,568-590,649-671
T09B4.1 9 136-155,240-262,275-297,302-324,336-358,422-444,524-541,568-590,649-671
Sequence
Target Sequence 
>C. ELEGANS:181004_S_AT
atcgccaaaactgttcgactctctccgaagactgtcagtgtaaagaatgcttgggagaaa
acgacttggtgcaagaaaccgaagctatttggaatcattgctcgatactacggcgagatt
cagacgaaatattggagtgtcaaattcttcggatactggaagatcaagaaaatcccatgc
tttttgatgatgctccctgcagcgattctgactgtgctagcaatcaagtcatcgtggaat
gatgtattcttaaataagcgatggaacaatatatgggtgctcactgctcgttcagaccac
tccctaccaatggccattcattcttcggttcttctttttgttgccatcttctacataaac
tccgaagtatttactcgcatcatcttttcttccagtccatttatctacatttacattgcc
acgtacatcgataagctgacacaagggaccattgctggaaaccgcctttggcagtacttt
gaatctccaggaatcttgccattcttcgtattcagacgtgtttggcaagacggatggcgt
ggaaaattgctctacatctacatcctcggttacttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGCCAAAACTGTTCGACTCTCTC 91 37 1411 Antisense
GGAATCATTGCTCGATACTACGGCG 133 533 1501 Antisense
TGCTTTTTGATGATGCTCCCTGCAG 708 579 1588 Antisense
CCCTGCAGCGATTCTGACTGTGCTA 117 261 1605 Antisense
AATATATGGGTGCTCACTGCTCGTT 554 173 1678 Antisense
ACCAATGGCCATTCATTCTTCGGTT 313 85 1716 Antisense
TTGCCATCTTCTACATAAACTCCGA 324 701 1751 Antisense
TTTTCTTCCAGTCCATTTATCTACA 448 675 1795 Antisense
ATTGCTGGAAACCGCCTTTGGCAGT 170 3 1861 Antisense
GGAATCTTGCCATTCTTCGTATTCA 574 533 1900 Antisense
TACATCTACATCCTCGGTTACTTCG 405 643 1963 Antisense
Sequence Source Affymetrix Proprietary Database