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[181003_at]

Description B0410.1 /REP_DB=WormBase Gene ID /WP=CE06707 /TR=Q17501 /GB=AAA96092.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 0      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 15.4
(-1.9)
A 		4.1
(-3)
A 		35.7
(0.1)
P 		64.6
(3)
P 		61
B 30.9
(-0.1)
P 		22.4
(-3)
A 		24.5
(-2.3)
P 		39.7
(3)
A 		17
C 27.9
(-2.4)
M 		31.9
(-1.7)
A 		24.2
(-3)
A 		60.4
(3)
P 		36
avr 24.7
(-2.1) 		19.5
(-3) 		28.1
(-1.5) 		54.9
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 16.5
(-1.3)
A 		5.8
(-2.6)
A 		50.1
(3)
A 		2.7
(-3)
A 		11.9
(-1.8)
A 		13.7
(-1.6)
A 		47
B 17.6
(0.4)
A 		30
(3)
M 		14.9
(-0.2)
A 		4.6
(-2.4)
A 		21.9
(1.3)
A 		1.9
(-3)
A 		28
C 2.2
(-3)
A 		51.8
(1.3)
P 		4
(-2.8)
A 		71.6
(3)
A 		10.7
(-2.3)
A 		13.5
(-2)
A 		69
avr 12.1
(-2.3) 		29.2
(3) 		23
(1.1) 		26.3
(2.1) 		14.8
(-1.4) 		9.7
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 5.6
(0.3)
A 		0.9
(-3)
A 		9.3
(2.9)
P 		9.5
(3)
P 		9
B 9.9
(3)
P 		5.5
(-3)
A 		5.7
(-2.7)
P 		8.5
(1.1)
A 		4
C 9.2
(-0.3)
M 		9.2
(-0.3)
A 		8.4
(-3)
A 		10.2
(3)
P 		2
avr 8.2
(1.3) 		5.2
(-3) 		7.8
(0.7) 		9.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3
(-1.6)
A 		2.1
(-2.2)
A 		10.9
(3)
A 		0.7
(-3)
A 		3.6
(-1.3)
A 		3.3
(-1.5)
A 		10
B 6.1
(0.5)
A 		10
(3)
M 		3.6
(-1.1)
A 		1.2
(-2.7)
A 		8.9
(2.3)
A 		0.7
(-3)
A 		9
C 0.8
(-3)
A 		15.8
(3)
P 		1
(-2.9)
A 		14.4
(2.4)
A 		3.4
(-2)
A 		4.5
(-1.5)
A 		15
avr 3.3
(-2.5) 		9.3
(3) 		5.2
(-0.8) 		5.4
(-0.6) 		5.3
(-0.7) 		2.8
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181003_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18553
Sequence Type Exemplar sequence
Representative Public ID B0410.1 NCBI
Target Description B0410.1 /REP_DB=WormBase Gene ID /WP=CE06707 /TR=Q17501 /GB=AAA96092.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076102(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076102 NCBI Caenorhabditis elegans B0410.1 (B0410.1) mRNA, complete cds. 11/11 None
B0410.1 ENSEMBL cdna:known chromosome:CEL140:X:2894565:2895236:1 gene:B0410.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2894564-2895236(+) 93.21 100.0
Public Domain and Genome References
Gene Title
Ensembl B0410.1
Entrez Gene 181981 Entrez gene
SwissProt Q17501 EMBL-EBI
WormBase CE06707 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96092 Hypothetical protein B0410.1 [Caenorhabditis elegans] ref|NP_508503.1| B0410.1 [Caenorhabditis elegans] 5.0E-60
Sequence
Target Sequence 
>C. ELEGANS:181003_AT
ggagactgtgtcaaggagcatttatgtatagcaaatacggtaatttttttgaatgtcttc
tataatagaaacaaaaatcttgttacaaattttatgattaaatgtcccagaatgcgttcc
ttcgatgtaggcctattttttttaatcgtttccagttgttgtcattttcattataaaatg
catattccatctaaatccacaaatttttgccaacgtgacaaaatcacaacccaccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGACTGTGTCAAGGAGCATTTAT 54 519 52 Antisense
ATTTTTTTGAATGTCTTCTATAATA 418 15 94 Antisense
GATTAAATGTCCCAGAATGCGTTCC 150 429 147 Antisense
GAATGCGTTCCTTCGATGTAGGCCT 269 331 161 Antisense
TGCGTTCCTTCGATGTAGGCCTATT 645 563 164 Antisense
GATGTAGGCCTATTTTTTTTAATCG 624 409 175 Antisense
TTTAATCGTTTCCAGTTGTTGTCAT 410 673 192 Antisense
TCCAGTTGTTGTCATTTTCATTATA 625 589 202 Antisense
ATGCATATTCCATCTAAATCCACAA 465 43 229 Antisense
ATCCACAAATTTTTGCCAACGTGAC 140 39 246 Antisense
ACGTGACAAAATCACAACCCACCCA 524 95 264 Antisense
Sequence Source Affymetrix Proprietary Database