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[181002_at]

Description F42A9.8 /REP_DB=WormBase Gene ID /WP=CE07229 /TR=Q20317 /GB=AAB03163.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      6grp_highest_nonorm > 95      6grp_total > 97      4grp_total > 09      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 660
1 2 3 4 range
A 273.1
(-3)
M 		381
(-2)
A 		425.1
(-1.6)
P 		932.9
(3)
P 		660
B 345
(-3)
A 		458
(-1.7)
P 		475.1
(-1.5)
P 		874.9
(3)
P 		530
C 305.4
(-3)
M 		348
(-2.5)
A 		452.6
(-1.4)
P 		845.7
(3)
P 		540
avr 307.8
(-3) 		395.7
(-2.1) 		450.9
(-1.5) 		884.5
(3) 		577

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1212
1 2 3 4 5 6 range
A 347.6
(-3)
P 		359.6
(-2.9)
P 		555.4
(-1.5)
P 		526.9
(-1.7)
P 		1113
(2.4)
P 		1198.1
(3)
P 		851
B 416.4
(-3)
P 		434
(-2.9)
P 		450.4
(-2.8)
P 		610.9
(-2)
P 		967.9
(-0.1)
P 		1541.1
(3)
P 		1125
C 328.8
(-3)
P 		440.1
(-2.4)
P 		404.3
(-2.6)
P 		598.6
(-1.6)
P 		902.3
(0.1)
P 		1449
(3)
P 		1120
avr 364.3
(-3) 		411.2
(-2.7) 		470
(-2.4) 		578.8
(-1.8) 		994.4
(0.7) 		1396.1
(3) 		1032
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 99.5
(-1.1)
M 		82.7
(-3)
A 		111.1
(0.2)
P 		136.6
(3)
P 		54
B 110
(-3)
A 		113.1
(-2.8)
P 		110.1
(-3)
P 		186.4
(3)
P 		76
C 101.1
(-2.9)
M 		100.1
(-3)
A 		157.8
(3)
P 		142.6
(1.4)
P 		58
avr 103.5
(-2.5) 		98.6
(-3) 		126.3
(-0.1) 		155.2
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 511
1 2 3 4 5 6 range
A 64.1
(-3)
P 		127.9
(-1.6)
P 		120.9
(-1.7)
P 		133.6
(-1.5)
P 		335.8
(3)
P 		291.7
(2)
P 		272
B 144.9
(-2.5)
P 		144.5
(-2.5)
P 		109.4
(-3)
P 		161.8
(-2.3)
P 		393.2
(0.7)
P 		574.7
(3)
P 		465
C 121.9
(-2.7)
P 		134.3
(-2.5)
P 		102.9
(-3)
P 		120.4
(-2.7)
P 		292
(-0)
P 		485
(3)
P 		382
avr 110.3
(-3) 		135.6
(-2.6) 		111.1
(-3) 		138.6
(-2.5) 		340.3
(1.1) 		450.5
(3) 		340
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181002_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10320
Sequence Type Exemplar sequence
Representative Public ID F42A9.8 NCBI
Target Description F42A9.8 /REP_DB=WormBase Gene ID /WP=CE07229 /TR=Q20317 /GB=AAB03163.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069073(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069073 NCBI Caenorhabditis elegans F42A9.8 (F42A9.8) mRNA, complete cds. 11/11 None
SNAP00000042136 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8618305:8618761:-1 11/11 None
GENEFINDER00000042143 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8618305:8618761:-1 11/11 None
F42A9.8 ENSEMBL cdna:known chromosome:CEL140:IV:8618305:8618761:-1 gene:F42A9.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8618310-8618767(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42A9.8
Entrez Gene 185656 Entrez gene
SwissProt Q20317 EMBL-EBI
WormBase CE07229 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB03163 Hypothetical protein F42A9.8 [Caenorhabditis elegans] ref|NP_501474.1| F42A9.8 [Caenorhabditis elegans] 6.0E-61
blast CAE60018 Hypothetical protein CBG03520 [Caenorhabditis briggsae] 2.0E-26
Sequence
Target Sequence 
>C. ELEGANS:181002_AT
tgatgtcatcgggacccttggatccatcagatgtcacgttattcacttcataccccagtc
ccatagttgttccgctcgaattcatagaagaacagtctaaatcgtcgagagaagagctgg
aaattgatgaaagcggtctttatattatgtcgaaagcactcgaagaattcatgcgaacag
tgatgcgaggagcaacgcagaatggttcccgacttctagactacgattcaattgccgagt
tctttgccaattcagagttcagggcgctgaaagatttcttccctgaaagagtccggttcg
at

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATGTCATCGGGACCCTTGGATCC 382 567 14 Antisense
GACCCTTGGATCCATCAGATGTCAC 184 381 26 Antisense
ATGTCACGTTATTCACTTCATACCC 653 47 44 Antisense
CCATAGTTGTTCCGCTCGAATTCAT 323 271 74 Antisense
GAAAGCGGTCTTTATATTATGTCGA 649 359 142 Antisense
GGAGCAACGCAGAATGGTTCCCGAC 561 519 202 Antisense
TTCCCGACTTCTAGACTACGATTCA 703 697 219 Antisense
GACTACGATTCAATTGCCGAGTTCT 158 373 232 Antisense
TTGCCGAGTTCTTTGCCAATTCAGA 120 701 245 Antisense
GCCAATTCAGAGTTCAGGGCGCTGA 10 279 259 Antisense
CTTCCCTGAAAGAGTCCGGTTCGAT 62 3 291 Antisense
Sequence Source Affymetrix Proprietary Database