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[181001_at]

Description ZK816.3 /REP_DB=WormBase Gene ID /WP=CE05116 /TR=Q23609 /GB=AAA82324.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 16.1
(-2.2)
A 		4.4
(-3)
A 		6.3
(-2.9)
A 		96.3
(3)
A 		92
B 4.3
(-2.6)
A 		22.6
(0)
A 		1.4
(-3)
A 		43.8
(3)
A 		42
C 14.3
(1.6)
A 		4.4
(-2.2)
A 		2.4
(-3)
A 		17.8
(3)
A 		15
avr 11.6
(-2) 		10.5
(-2.1) 		3.4
(-3) 		52.6
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 45.1
(3)
A 		19.4
(-0.6)
A 		31.6
(1.1)
A 		2.8
(-3)
A 		31
(1)
A 		27.5
(0.5)
A 		42
B 3.4
(-3)
A 		22.7
(2.8)
A 		23.5
(3)
A 		5.4
(-2.4)
A 		12.9
(-0.2)
A 		7.6
(-1.7)
A 		20
C 2.6
(-3)
A 		51.4
(3)
A 		4
(-2.8)
A 		34.3
(0.9)
A 		3.2
(-2.9)
A 		6.6
(-2.5)
A 		49
avr 17
(-1.9) 		31.2
(3) 		19.7
(-1) 		14.2
(-2.9) 		15.7
(-2.4) 		13.9
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 5.8
(-0.8)
A 		1
(-3)
A 		1.6
(-2.7)
A 		14.1
(3)
A 		13
B 1.4
(-2.3)
A 		5.6
(0.5)
A 		0.3
(-3)
A 		9.3
(3)
A 		9
C 4.7
(3)
A 		1.3
(-2.2)
A 		0.8
(-3)
A 		3
(0.4)
A 		4
avr 4
(-0.6) 		2.6
(-1.7) 		0.9
(-3) 		8.8
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 8.3
(2.2)
A 		6.9
(1.3)
A 		6.9
(1.3)
A 		0.7
(-3)
A 		9.4
(3)
A 		6.7
(1.1)
A 		9
B 1.2
(-3)
A 		7.5
(3)
A 		5.7
(1.3)
A 		1.4
(-2.8)
A 		5.2
(0.8)
A 		2.8
(-1.5)
A 		6
C 1
(-3)
A 		15.7
(3)
A 		1
(-3)
A 		6.9
(-0.6)
A 		1
(-3)
A 		2.2
(-2.5)
A 		15
avr 3.5
(-2.6) 		10
(3) 		4.5
(-1.7) 		3
(-3) 		5.2
(-1.1) 		3.9
(-2.2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 181001_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18152
Sequence Type Exemplar sequence
Representative Public ID ZK816.3 NCBI
Target Description ZK816.3 /REP_DB=WormBase Gene ID /WP=CE05116 /TR=Q23609 /GB=AAA82324.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076176(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076176 NCBI Caenorhabditis elegans ZK816.3 (ZK816.3) mRNA, complete cds. 11/11 None
SNAP00000023558 ENSEMBL cdna:SNAP chromosome:CEL140:X:3348106:3348630:1 11/11 None
GENEFINDER00000023571 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3348381:3349387:1 10/11 None
ZK816.3 ENSEMBL cdna:known chromosome:CEL140:X:3348332:3348630:1 gene:ZK816.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3348377-3348631(+) 99.5 99.5
Public Domain and Genome References
Gene Title
Ensembl ZK816.3
Entrez Gene 191430 Entrez gene
SwissProt Q23609 EMBL-EBI
WormBase CE39080 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82324 Hypothetical protein ZK816.3 [Caenorhabditis elegans] 2.0E-36
blast NP_508577 ZK816.3 [Caenorhabditis elegans] 2.0E-23
blast AAA82324 Hypothetical protein ZK816.3 [Caenorhabditis elegans] 4.0E-23
blast NP_508577 ZK816.3 [Caenorhabditis elegans] 4.0E-23
Sequence
Target Sequence 
>C. ELEGANS:181001_AT
gacttttcattgggcctcatattgcaagatatctaagaatgcgaagacttatgaacgagg
ccaggcgacaaaacttgatggcacatcgtcgtcaggacaacgcgaacacaagttccaact
catctgttgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTTTTCATTGGGCCTCATATTGC 505 371 53 Antisense
TGGGCCTCATATTGCAAGATATCTA 337 555 63 Antisense
GCGAAGACTTATGAACGAGGCCAGG 211 253 93 Antisense
GACTTATGAACGAGGCCAGGCGACA 702 369 98 Antisense
ACGAGGCCAGGCGACAAAACTTGAT 139 93 107 Antisense
AGGCGACAAAACTTGATGGCACATC 544 53 115 Antisense
GATGGCACATCGTCGTCAGGACAAC 181 407 129 Antisense
ATCGTCGTCAGGACAACGCGAACAC 531 35 137 Antisense
GGACAACGCGAACACAAGTTCCAAC 447 525 147 Antisense
GAACACAAGTTCCAACTCATCTGTT 485 351 156 Antisense
CACAAGTTCCAACTCATCTGTTGTG 672 193 159 Antisense
Sequence Source Affymetrix Proprietary Database