[Home] | [Total List]

[181000_s_at]

Description Y79H2A.6 /REP_DB=WormBase Gene ID /WP=CE24672 /TR=Q9U1R7 /GB=CAB54510.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 48      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 77      6grp_total > 48      4grp_total > 46      6grp_highest_sub > Cu      6grp_cgc > 17      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 436
1 2 3 4 range
A 1533.8
(1.7)
P 		1611.4
(3)
P 		1458.4
(0.5)
P 		1240.8
(-3)
P 		371
B 1544.5
(3)
P 		1308.2
(-3)
P 		1380.6
(-1.2)
P 		1507.7
(2.1)
P 		236
C 1676.7
(3)
P 		1468
(-0.4)
P 		1305.3
(-3)
P 		1439.3
(-0.8)
P 		371
avr 1585
(3) 		1462.5
(-0.6) 		1381.4
(-3) 		1395.9
(-2.6) 		204

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 457
1 2 3 4 5 6 range
A 1482.3
(3)
P 		1153.9
(-1.5)
P 		1262.8
(-0)
P 		1044.3
(-3)
P 		1182.2
(-1.1)
P 		1276.5
(0.2)
P 		438
B 1455.6
(2.1)
P 		1259.9
(-1.8)
P 		1201.8
(-3)
P 		1501.4
(3)
P 		1334.7
(-0.3)
P 		1428.6
(1.5)
P 		300
C 1288.6
(-0.6)
P 		1408.1
(1.7)
P 		1169.9
(-2.8)
P 		1188.6
(-2.4)
P 		1158.4
(-3)
P 		1480.5
(3)
P 		322
avr 1408.8
(3) 		1274
(-1.1) 		1211.5
(-3) 		1244.8
(-2) 		1225.1
(-2.6) 		1395.2
(2.6) 		197
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 377
1 2 3 4 range
A 558.5
(3)
P 		349.8
(-0.3)
P 		381.3
(0.2)
P 		181.6
(-3)
P 		377
B 492.5
(3)
P 		323.1
(-2.9)
P 		319.9
(-3)
P 		321.3
(-3)
P 		173
C 555
(3)
P 		422.1
(0.4)
P 		454.9
(1.1)
P 		242.7
(-3)
P 		312
avr 535.3
(3) 		365
(-0.6) 		385.4
(-0.1) 		248.5
(-3) 		287

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 303
1 2 3 4 5 6 range
A 273.3
(-2.7)
P 		410.4
(3)
P 		275
(-2.6)
P 		264.9
(-3)
P 		356.7
(0.8)
P 		310.8
(-1.1)
P 		146
B 506.5
(2.1)
P 		419.4
(0.1)
P 		291.8
(-3)
P 		397.7
(-0.5)
P 		542.3
(3)
P 		532.7
(2.8)
P 		251
C 477.6
(2.6)
P 		429.7
(1.5)
P 		297.8
(-1.6)
P 		239
(-3)
P 		374.9
(0.2)
P 		495.6
(3)
P 		257
avr 419.1
(2) 		419.8
(2) 		288.2
(-3) 		300.5
(-2.5) 		424.6
(2.2) 		446.4
(3) 		158
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 181000_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7948
Sequence Type Exemplar sequence
Representative Public ID Y79H2A.6 NCBI
Target Description Y79H2A.6 /REP_DB=WormBase Gene ID /WP=CE24672 /TR=Q9U1R7 /GB=CAB54510.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067169(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067169 NCBI Caenorhabditis elegans ARp2/3 compleX component family member (arx-3) (arx-3) mRNA, complete cds. 11/11 None
GENEFINDER00000018016 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12052358:12058331:-1 10/11 None
SNAP00000018011 ENSEMBL cdna:SNAP chromosome:CEL140:III:12052570:12058331:-1 11/11 None
Y79H2A.6 ENSEMBL cdna:known chromosome:CEL140:III:12052214:12058334:-1 gene:Y79H2A.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12053457-12058327(-) 98.1 98.1
Public Domain and Genome References
Gene Title
Gene Symbol arx-3
Ensembl Y79H2A.6
Entrez Gene 3565442 Entrez gene
SwissProt Q9U1R7 EMBL-EBI
WormBase CE24672 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1583383_AT similar to actin related protein 2/3 complex subunit 1A cfa
CANINE:1588015_AT similar to actin related protein 2/3 complex subunit 1A cfa
CANINE_2:CFA.12427.1.A1_AT similar to actin related protein 2/3 complex subunit 1A cfa
CANINE_2:CFA.6259.1.A1_AT similar to actin related protein 2/3 complex subunit 1A cfa
CANINE_2:CFAAFFX.23109.1.S1_AT similar to actin related protein 2/3 complex subunit 1A cfa
CANINE_2:CFAAFFX.23231.1.S1_AT similar to actin related protein 2/3 complex subunit 1A cfa
CANINE_2:CFAAFFX.23231.1.S1_S_AT similar to actin related protein 2/3 complex subunit 1A cfa
DROSOPHILA_2:1626492_S_AT Suppressor of profilin 2 dm
DROSGENOME1:143007_AT Suppressor of profilin 2 dm
HG-U133A:200950_AT actin related protein 2/3 complex, subunit 1A, 41kDa hs
HG-U133_PLUS_2:200950_AT actin related protein 2/3 complex, subunit 1A, 41kDa hs
HG-FOCUS:200950_AT actin related protein 2/3 complex, subunit 1A, 41kDa hs
HG-U133A_2:200950_AT actin related protein 2/3 complex, subunit 1A, 41kDa hs
HU35KSUBD:RC_F03974_AT actin related protein 2/3 complex, subunit 1A, 41kDa hs
HUGENEFL:Y08999_AT actin related protein 2/3 complex, subunit 1A, 41kDa hs
U133_X3P:G5454077_3P_AT actin related protein 2/3 complex, subunit 1A, 41kDa hs
HG-U95AV2:38815_AT actin related protein 2/3 complex, subunit 1A, 41kDa hs
HG-U95B:52386_I_AT actin related protein 2/3 complex, subunit 1A, 41kDa hs
HG-U95B:52387_R_AT actin related protein 2/3 complex, subunit 1A, 41kDa hs
HG-U95AV2:32992_AT Actin related protein 2/3 complex, subunit 1A, 41kDa hs
HG-U133_PLUS_2:215457_AT Actin related protein 2/3 complex, subunit 1A, 41kDa hs
HG-U133A_2:215457_AT Actin related protein 2/3 complex, subunit 1A, 41kDa hs
HG-U133A:215457_AT Actin related protein 2/3 complex, subunit 1A, 41kDa hs
U133_X3P:HS.124126.0.S1_3P_AT Actin related protein 2/3 complex, subunit 1A, 41kDa hs
MU11KSUBA:AA210200_S_AT actin related protein 2/3 complex, subunit 1A mm
MG-U74AV2:95144_AT actin related protein 2/3 complex, subunit 1A mm
MOE430A:1416079_A_AT actin related protein 2/3 complex, subunit 1A mm
MOUSE430A_2:1416079_A_AT actin related protein 2/3 complex, subunit 1A mm
MOUSE430_2:1416079_A_AT actin related protein 2/3 complex, subunit 1A mm
MU19KSUBA:TC17648_AT Actin related protein 2/3 complex, subunit 1A, mRNA (cDNA clone MGC:5680 IMAGE:3485409) mm
MU19KSUBA:TC20766_AT Actin related protein 2/3 complex, subunit 1A, mRNA (cDNA clone MGC:5680 IMAGE:3485409) mm
MU19KSUBA:TC20766_G_AT Actin related protein 2/3 complex, subunit 1A, mRNA (cDNA clone MGC:5680 IMAGE:3485409) mm
MU19KSUBA:TC21450_AT Actin related protein 2/3 complex, subunit 1A, mRNA (cDNA clone MGC:5680 IMAGE:3485409) mm
MU19KSUBB:TC34513_S_AT Actin related protein 2/3 complex, subunit 1A, mRNA (cDNA clone MGC:5680 IMAGE:3485409) mm
MU19KSUBC:TC41394_AT Actin related protein 2/3 complex, subunit 1A, mRNA (cDNA clone MGC:5680 IMAGE:3485409) mm
MU19KSUBC:TC41394_G_AT Actin related protein 2/3 complex, subunit 1A, mRNA (cDNA clone MGC:5680 IMAGE:3485409) mm
YEAST_2:1775915_AT Essential subunit of the ARP2/3 complex, which is required for the motility and integrity of cortical actin patches Sc
Protein Similarities
Method ID Description E-Value
blast CAB54510 Hypothetical protein Y79H2A.6 [Caenorhabditis elegans] ref|NP_499570.1| ARp2/3 compleX component family member (arx-3) [Caenorhabditis elegans] 0.0
blast CAE71286 Hypothetical protein CBG18174 [Caenorhabditis briggsae] 0.0
blast XP_875278 PREDICTED: similar to actin related protein 2/3 complex subunit 1A isoform 2 [Bos taurus] 1.0E-112
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.049
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 2.2E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.011
Sequence
Target Sequence 
>C. ELEGANS:181000_S_AT
tcttctggccgttggatcgtgtgatttcaagtgtcgtgtattttctgcctacgtgaaaga
ggtcgacgagaagccgtcgccaaatccgtgggggcaaaaaatgccgttcggacagttgat
gagtgaatattccgtcggtggatgggttcatcgagtcgctttttcgccgtccgggtgtcg
gttggcttttgtttctcatgattcatcggtttcatttgtcgattcgacagttgacagcca
aaaagttcaaaacttgctgaccattcatctgccgttcacaacagtcgaatggattactga
gaacagtgttgtcacggctggtcacgactgctcgccggtgctctttgtagtgtctcaaga
tgttttgaaagaagtttgcaaattggatgtcccatcagcggccaagtcatcgacggttaa
cagtgctcttcagctgttcaaaaatatcgatcgaaataatgctgcggaaaagattaacgt
cgccttgaagacactccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCTGGCCGTTGGATCGTGTGAT 414 617 495 Antisense
AGTGTCGTGTATTTTCTGCCTACGT 548 57 524 Antisense
GAGGTCGACGAGAAGCCGTCGCCAA 214 401 553 Antisense
AATGCCGTTCGGACAGTTGATGAGT 313 167 594 Antisense
ATTCCGTCGGTGGATGGGTTCATCG 359 7 623 Antisense
TCGGTTGGCTTTTGTTTCTCATGAT 191 607 672 Antisense
AAAACTTGCTGACCATTCATCTGCC 345 131 743 Antisense
TTCATCTGCCGTTCACAACAGTCGA 345 687 758 Antisense
CGGTGCTCTTTGTAGTGTCTCAAGA 154 245 830 Antisense
TCGACGGTTAACAGTGCTCTTCAGC 174 601 904 Antisense
TAACGTCGCCTTGAAGACACTCCAT 285 639 969 Antisense
Sequence Source Affymetrix Proprietary Database