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[180998_at]

Description B0294.1 /REP_DB=WormBase Gene ID /WP=CE19656 /TR=Q9TXP8 /GB=AAC64978.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      4grp_highest_8_8 > 56      4grp_high_8_8 > 35      6grp_highest_nonorm > 75      6grp_total > 10      4grp_total > 45      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1474
1 2 3 4 range
A 2504.7
(3)
P 		2321.8
(2.1)
P 		1286.3
(-3)
P 		1353.4
(-2.7)
P 		1218
B 2542.7
(3)
P 		2418.3
(2.4)
P 		1257.2
(-3)
P 		1399.1
(-2.3)
P 		1286
C 2631
(3)
P 		2400.4
(2.1)
P 		1282.7
(-2.5)
P 		1157.3
(-3)
P 		1474
avr 2559.5
(3) 		2380.2
(2.2) 		1275.4
(-3) 		1303.3
(-2.9) 		1284

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 539
1 2 3 4 5 6 range
A 808.1
(-3)
P 		1208.1
(3)
P 		916.1
(-1.4)
P 		1045.1
(0.6)
P 		896.2
(-1.7)
P 		948
(-0.9)
P 		400
B 669.3
(-3)
P 		1057.2
(2.3)
P 		969.1
(1.1)
P 		1109.7
(3)
P 		968.8
(1.1)
P 		831
(-0.8)
P 		440
C 905.6
(-2.3)
P 		907.5
(-2.2)
P 		1127.3
(3)
P 		875.8
(-3)
P 		1126
(3)
P 		912.2
(-2.1)
P 		252
avr 794.3
(-3) 		1057.6
(3) 		1004.2
(1.8) 		1010.2
(1.9) 		997
(1.6) 		897.1
(-0.7) 		263
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 717
1 2 3 4 range
A 912
(3)
P 		504
(-0.4)
P 		336.3
(-1.8)
P 		198.1
(-3)
P 		714
B 810.8
(3)
P 		597.3
(0.5)
P 		291.3
(-3)
P 		298.2
(-2.9)
P 		520
C 870.9
(3)
P 		690.1
(1.4)
P 		447.1
(-0.8)
P 		195.1
(-3)
P 		676
avr 864.6
(3) 		597.1
(0.5) 		358.2
(-1.8) 		230.5
(-3) 		634

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 281
1 2 3 4 5 6 range
A 149
(-3)
P 		429.7
(3)
P 		199.5
(-1.9)
P 		265.1
(-0.5)
P 		270.4
(-0.4)
P 		230.8
(-1.3)
P 		281
B 232.9
(-3)
P 		351.9
(1.4)
P 		235.3
(-2.9)
P 		293.9
(-0.7)
P 		393.6
(3)
P 		309.9
(-0.1)
P 		161
C 335.6
(2.1)
P 		276.9
(0.2)
P 		286.9
(0.5)
P 		176.1
(-3)
P 		364.4
(3)
P 		305.4
(1.1)
P 		188
avr 239.2
(-3) 		352.8
(3) 		240.6
(-2.9) 		245
(-2.7) 		342.8
(2.5) 		282
(-0.7) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180998_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18132
Sequence Type Exemplar sequence
Representative Public ID B0294.1 NCBI
Target Description B0294.1 /REP_DB=WormBase Gene ID /WP=CE19656 /TR=Q9TXP8 /GB=AAC64978.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075947(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075947 NCBI Caenorhabditis elegans B0294.1 (B0294.1) mRNA, complete cds. 11/11 None
SNAP00000008488 ENSEMBL cdna:SNAP chromosome:CEL140:X:1896848:1897295:-1 9/11 None
GENEFINDER00000008489 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1896848:1897295:-1 9/11 None
B0294.1 ENSEMBL cdna:known chromosome:CEL140:X:1896848:1897337:-1 gene:B0294.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1896847-1897337(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0294.1
Entrez Gene 181908 Entrez gene
SwissProt Q9TXP8 EMBL-EBI
WormBase CE19656 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC64978 Hypothetical protein B0294.1 [Caenorhabditis elegans] ref|NP_508348.1| B0294.1 [Caenorhabditis elegans] 6.0E-80
blast AAC64978 Hypothetical protein B0294.1 [Caenorhabditis elegans] ref|NP_508348.1| B0294.1 [Caenorhabditis elegans] 3.0E-71
blast AAA98570 Hypothetical protein C12D5.3 [Caenorhabditis elegans] ref|NP_504987.1| C12D5.3 [Caenorhabditis elegans] 9.0E-42
blast H89471 protein B0294.2 [imported] - Caenorhabditis elegans 2.0E-29
Sequence
Target Sequence 
>C. ELEGANS:180998_AT
gctccacgtcaactccaaaaaatgctctcttcgaaatccgctctctttgtaattttggcc
acctgcagcatcgtcgccatttctgaagccattaactgctatcaacaaaacgttggcatc
ccgaaagccaaagttatccgcaaccaactctcctgcttcgcaatgttctacccaagcgag
cagatctcgtcattcggaggaatcgccaacatcccccagaaccagcacagaaaacaagag
ctcgccaaagccgacggcacgtgccaaagaatggagaaaaccttgttggacaaaacccgc
ccagctaccttcgcagatacgtacatctgccattgttcgcagccgctctgcaactatcct
agaagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCCACGTCAACTCCAAAAAATGC 94 299 34 Antisense
AAAAATGCTCTCTTCGAAATCCGCT 279 129 51 Antisense
GCTCTCTTTGTAATTTTGGCCACCT 118 299 73 Antisense
TCGTCGCCATTTCTGAAGCCATTAA 251 603 104 Antisense
GCCAAAGTTATCCGCAACCAACTCT 631 277 160 Antisense
CTGCTTCGCAATGTTCTACCCAAGC 97 237 186 Antisense
CGAGCAGATCTCGTCATTCGGAGGA 694 249 210 Antisense
AAACAAGAGCTCGCCAAAGCCGACG 16 129 265 Antisense
CAGCTACCTTCGCAGATACGTACAT 697 203 335 Antisense
GATACGTACATCTGCCATTGTTCGC 147 425 349 Antisense
CCGCTCTGCAACTATCCTAGAAGCA 323 263 376 Antisense
Sequence Source Affymetrix Proprietary Database