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[180997_at]

Description C34D4.3 /REP_DB=WormBase Gene ID /WP=CE06924 /TR=Q18451 /GB=AAB00703.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 1.8
(-3)
A 		4.5
(-2.2)
A 		2.3
(-2.8)
A 		21.4
(3)
A 		20
B 1.2
(-3)
A 		5
(-0.7)
A 		4.8
(-0.8)
A 		11
(3)
A 		10
C 1.3
(-3)
A 		1.4
(-3)
A 		2.6
(-2.9)
A 		63.3
(3)
P 		62
avr 1.4
(-3) 		3.6
(-2.6) 		3.2
(-2.6) 		31.9
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 297
1 2 3 4 5 6 range
A 1.7
(-3)
A 		2.1
(-3)
A 		1.4
(-3)
A 		15
(-2.7)
A 		177.8
(0.6)
P 		298.3
(3)
P 		297
B 8.7
(-2.8)
A 		3.1
(-3)
A 		1.9
(-3)
A 		10.5
(-2.8)
A 		252.3
(3)
P 		248.5
(2.9)
P 		250
C 2.6
(-3)
A 		2
(-3)
A 		1.3
(-3)
A 		37.5
(-2.2)
P 		270.5
(3)
P 		266.2
(2.9)
P 		269
avr 4.3
(-2.9) 		2.4
(-3) 		1.5
(-3) 		21
(-2.6) 		233.5
(2.2) 		271
(3) 		270
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.7
(-2.8)
A 		1
(-2)
A 		0.6
(-3)
A 		3.1
(3)
A 		3
B 0.4
(-3)
A 		1.2
(-0.5)
A 		1.1
(-0.8)
A 		2.3
(3)
A 		2
C 0.4
(-3)
A 		0.4
(-3)
A 		0.9
(-2.7)
A 		10.7
(3)
P 		10
avr 0.5
(-3) 		0.9
(-2.5) 		0.9
(-2.5) 		5.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 0.3
(-3)
A 		0.7
(-3)
A 		0.3
(-3)
A 		3.8
(-2.7)
A 		53.6
(1.4)
P 		72.6
(3)
P 		72
B 3
(-2.9)
A 		1
(-3)
A 		0.5
(-3)
A 		2.8
(-2.9)
A 		102.5
(3)
P 		92.7
(2.4)
P 		102
C 1
(-3)
A 		0.6
(-3)
A 		0.3
(-3)
A 		7.5
(-2.5)
P 		87.5
(2.9)
P 		89.1
(3)
P 		89
avr 1.4
(-2.9) 		0.8
(-3) 		0.4
(-3) 		4.7
(-2.7) 		81.2
(2.7) 		84.8
(3) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180997_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10291
Sequence Type Exemplar sequence
Representative Public ID C34D4.3 NCBI
Target Description C34D4.3 /REP_DB=WormBase Gene ID /WP=CE06924 /TR=Q18451 /GB=AAB00703.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068723(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068723 NCBI Caenorhabditis elegans C34D4.3 (C34D4.3) mRNA, complete cds. 11/11 A 
GENEFINDER00000003814 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7153650:7154090:1 11/11 None
C34D4.3 ENSEMBL cdna:known chromosome:CEL140:IV:7153645:7154166:1 gene:C34D4.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003806 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7153655-7154096(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34D4.3
Entrez Gene 177488 Entrez gene
SwissProt Q18451 EMBL-EBI
WormBase CE06924 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB00703 Hypothetical protein C34D4.3 [Caenorhabditis elegans] ref|NP_501124.1| C34D4.3 [Caenorhabditis elegans] 1.0E-59
blast CAA87431 Hypothetical protein ZK1307.3 [Caenorhabditis elegans] ref|NP_496079.1| ZK1307.3 [Caenorhabditis elegans] sp|Q09361|YS13_CAEEL Hypothetical protein ZK1307.3 in chromosome II 8.0E-26
blast CAA87432 Hypothetical protein ZK1307.4 [Caenorhabditis elegans] ref|NP_496078.1| ZK1307.4 [Caenorhabditis elegans] sp|Q09362|YS14_CAEEL Hypothetical protein ZK1307.4 in chromosome II 2.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 2.4E-29
Sequence
Target Sequence 
>C. ELEGANS:180997_AT
ggagtcgagttatcgttggatccgccagtctgcccaatccaagccaatggtggtgtttct
acgcacaagatcattaatcactgcgacaaaatgttggcctataagataaaatcttccaat
aactccaactacagtgtcaacactatctttggacttattcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTCGAGTTATCGTTGGATCCGC 301 517 16 Antisense
TCGAGTTATCGTTGGATCCGCCAGT 21 603 20 Antisense
TCTGCCCAATCCAAGCCAATGGTGG 132 609 44 Antisense
GCCAATGGTGGTGTTTCTACGCACA 204 227 58 Antisense
GTTTCTACGCACAAGATCATTAATC 641 449 70 Antisense
ACAAGATCATTAATCACTGCGACAA 580 113 80 Antisense
CACTGCGACAAAATGTTGGCCTATA 157 199 94 Antisense
AAATCTTCCAATAACTCCAACTACA 520 117 124 Antisense
AACTCCAACTACAGTGTCAACACTA 171 141 136 Antisense
CAGTGTCAACACTATCTTTGGACTT 607 207 147 Antisense
AACACTATCTTTGGACTTATTCAGA 688 135 154 Antisense
Sequence Source Affymetrix Proprietary Database