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[180996_at]

Description C02H7.2 /REP_DB=WormBase Gene ID /WP=CE06758 /TR=Q17594 /GB=AAC47925.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 32.7
(-1.7)
A 		99.2
(1.8)
M 		7.9
(-3)
A 		121.2
(3)
A 		113
B 70.6
(3)
P 		23.4
(-3)
A 		53.4
(0.8)
A 		40.1
(-0.9)
A 		47
C 84.1
(0.5)
P 		32.3
(-2)
A 		10.7
(-3)
A 		135.9
(3)
A 		125
avr 62.5
(0.1) 		51.6
(-0.8) 		24
(-3) 		99.1
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 82
(3)
A 		81.6
(3)
A 		51.5
(-0.7)
A 		31.9
(-3)
A 		70.5
(1.6)
A 		39.9
(-2)
A 		50
B 79.1
(3)
P 		57.5
(1.1)
P 		79
(3)
P 		16.7
(-2.5)
A 		66.2
(1.9)
A 		11.6
(-3)
A 		68
C 75.5
(3)
A 		59.2
(0.8)
A 		53.7
(0.1)
A 		66.6
(1.8)
A 		33.5
(-2.7)
A 		31
(-3)
A 		45
avr 78.9
(3) 		66.1
(1.5) 		61.4
(1) 		38.4
(-1.7) 		56.7
(0.4) 		27.5
(-3) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 11.9
(0)
A 		21.5
(3)
M 		2.1
(-3)
A 		17.7
(1.8)
A 		19
B 22.5
(3)
P 		5.8
(-3)
A 		12.4
(-0.6)
A 		8.5
(-2)
A 		17
C 27.8
(3)
P 		9.3
(-1.6)
A 		3.7
(-3)
A 		22.9
(1.8)
A 		24
avr 20.7
(3) 		12.2
(-0.5) 		6.1
(-3) 		16.4
(1.2) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 15.1
(-1)
A 		29
(3)
A 		11.2
(-2.1)
A 		8.1
(-3)
A 		21.3
(0.8)
A 		9.7
(-2.5)
A 		21
B 27.5
(3)
P 		19.2
(0.9)
P 		19.2
(0.9)
P 		4.4
(-3)
A 		26.9
(2.8)
A 		4.3
(-3)
A 		23
C 28
(3)
A 		18.1
(-0.4)
A 		13.7
(-1.9)
A 		13.4
(-2)
A 		10.8
(-2.9)
A 		10.4
(-3)
A 		18
avr 23.5
(3) 		22.1
(2.5) 		14.7
(-0.4) 		8.6
(-2.8) 		19.7
(1.5) 		8.1
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180996_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18603
Sequence Type Exemplar sequence
Representative Public ID C02H7.2 NCBI
Target Description C02H7.2 /REP_DB=WormBase Gene ID /WP=CE06758 /TR=Q17594 /GB=AAC47925.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075746(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075746 NCBI Caenorhabditis elegans C02H7.2 (C02H7.2) mRNA, complete cds. 11/11 None
GENEFINDER00000036784 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:732323:735671:-1 11/11 None
C02H7.2 ENSEMBL cdna:known chromosome:CEL140:X:732497:735671:-1 gene:C02H7.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036779 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:732496-735671(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C02H7.2
Entrez Gene 182130 Entrez gene
SwissProt Q17594 EMBL-EBI
WormBase CE06758 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC47925 Hypothetical protein C02H7.2 [Caenorhabditis elegans] ref|NP_508147.1| C02H7.2 [Caenorhabditis elegans] 0.0
blast CAE63628 Hypothetical protein CBG08123 [Caenorhabditis briggsae] 0.0
blast CAE56413 Hypothetical protein CBG24105 [Caenorhabditis briggsae] 1.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 6.5E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508147.1 7 29-51,64-86,106-128,149-168,193-215,272-291,301-323
C02H7.2 7 29-51,64-86,106-128,149-168,193-215,272-291,301-323
GENEFINDER00000036784 7 29-51,64-86,106-128,149-168,193-215,272-291,301-323
Sequence
Target Sequence 
>C. ELEGANS:180996_AT
aaaagttcgcgcgagtggacgtgccatggccaagtatcagcttacgattaggacaaggca
acaaaatgcacttgtgaatggagtatcgttgtcctgtcaaatgagtgaatgcgggcgaac
ttcctcagttaggccgccaagaagtcaagttagcaaaaaggaaatgcggttatttattca
gtttttcgtggtctccctggtattcctactaacctggacaacttggcagtggctgcccta
catgtccgaatccaaatgggcgtactttgtaatgacatccttattcttcatcaacaactc
ggttaacccaacagtctatatcattttcaacactcaacttcgacgggaacttcattatct
catttgccgacatcatgttataacaactgctcaaaataagaggaaacagacgttgtttgg
gcgcggaatcgcggctgccaataaaattgaaacggattttcaaaataatactcgagacga
cgccaccaaatcattggttgatcaagccggctctctttcctctcaatcgcacggaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGTTCGCGCGAGTGGACGTGCC 249 131 657 Antisense
ACGTGCCATGGCCAAGTATCAGCTT 506 95 675 Antisense
GGCGAACTTCCTCAGTTAGGCCGCC 292 501 770 Antisense
TCCCTGGTATTCCTACTAACCTGGA 210 597 850 Antisense
TTGGCAGTGGCTGCCCTACATGTCC 95 707 879 Antisense
TTTTCAACACTCAACTTCGACGGGA 647 673 980 Antisense
GGAACTTCATTATCTCATTTGCCGA 591 529 1002 Antisense
AGACGTTGTTTGGGCGCGGAATCGC 289 71 1064 Antisense
TAATACTCGAGACGACGCCACCAAA 473 635 1122 Antisense
ATCATTGGTTGATCAAGCCGGCTCT 571 29 1146 Antisense
TCTTTCCTCTCAATCGCACGGAACA 421 615 1170 Antisense
Sequence Source Affymetrix Proprietary Database