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[180995_at]

Description C09D1.2 /REP_DB=WormBase Gene ID /WP=CE08029 /TR=O01762 /GB=AAB54131.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 59      4grp_total > 30      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 50
(2.2)
A 		16.7
(-1.8)
A 		6.9
(-3)
A 		56.7
(3)
A 		50
B 42.4
(3)
A 		35.1
(1.4)
A 		27.1
(-0.4)
A 		15.7
(-3)
A 		27
C 20.9
(-3)
A 		28
(-0.3)
A 		36.7
(3)
A 		30
(0.5)
A 		16
avr 37.8
(3) 		26.6
(-1.7) 		23.6
(-3) 		34.1
(1.4) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 77.8
(1.1)
A 		37.3
(-2.4)
A 		30.8
(-3)
A 		57.1
(-0.7)
A 		66.4
(0.1)
A 		99.4
(3)
M 		69
B 45.6
(0.9)
A 		26.5
(-3)
A 		43.8
(0.5)
A 		55.9
(3)
A 		38.4
(-0.6)
A 		55.6
(2.9)
A 		29
C 85.5
(3)
P 		29.2
(-3)
A 		50.9
(-0.7)
A 		74.3
(1.8)
A 		34.7
(-2.4)
A 		76.3
(2)
M 		56
avr 69.6
(2) 		31
(-3) 		41.8
(-1.6) 		62.4
(1.1) 		46.5
(-1) 		77.1
(3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 18.2
(3)
A 		3.6
(-2.3)
A 		1.8
(-3)
A 		8.3
(-0.6)
A 		16
B 13.5
(3)
A 		8.7
(0.2)
A 		6.3
(-1.2)
A 		3.3
(-3)
A 		10
C 6.9
(-1.6)
A 		8.1
(-0.7)
A 		12.8
(3)
A 		5.1
(-3)
A 		8
avr 12.9
(3) 		6.8
(-2) 		7
(-1.8) 		5.6
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 14.3
(-0.4)
A 		13.3
(-0.7)
A 		6.7
(-3)
A 		14.5
(-0.3)
A 		20
(1.6)
A 		24.2
(3)
M 		18
B 15.9
(0.6)
A 		8.8
(-3)
A 		10.6
(-2.1)
A 		14.8
(0)
A 		15.6
(0.4)
A 		20.7
(3)
A 		12
C 31.7
(3)
P 		8.9
(-3)
A 		12.9
(-1.9)
A 		15
(-1.4)
A 		11.2
(-2.4)
A 		25.5
(1.4)
M 		23
avr 20.6
(1.7) 		10.3
(-2.9) 		10.1
(-3) 		14.8
(-0.9) 		15.6
(-0.5) 		23.5
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180995_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2378
Sequence Type Exemplar sequence
Representative Public ID C09D1.2 NCBI
Target Description C09D1.2 /REP_DB=WormBase Gene ID /WP=CE08029 /TR=O01762 /GB=AAB54131.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058890(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058890 NCBI Caenorhabditis elegans C09D1.2 (C09D1.2) mRNA, complete cds. 11/11 None
SNAP00000001454 ENSEMBL cdna:SNAP chromosome:CEL140:I:4071800:4072885:-1 10/11 None
C09D1.2 ENSEMBL cdna:known chromosome:CEL140:I:4071800:4072828:-1 gene:C09D1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4071799-4072849(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C09D1.2
Entrez Gene 182445 Entrez gene
SwissProt O01762 EMBL-EBI
WormBase CE34253 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAE66725 Hypothetical protein CBG12071 [Caenorhabditis briggsae] 1.0E-146
blast AAB54131 Hypothetical protein C09D1.2 [Caenorhabditis elegans] ref|NP_491291.2| C09D1.2 [Caenorhabditis elegans] 3.0E-98
blast AAB54131 Hypothetical protein C09D1.2 [Caenorhabditis elegans] ref|NP_491291.2| C09D1.2 [Caenorhabditis elegans] 1.0E-97
blast CAE66725 Hypothetical protein CBG12071 [Caenorhabditis briggsae] 2.0E-94
blast CAE58427 Hypothetical protein CBG01558 [Caenorhabditis briggsae] 8.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 4.0E-5
Pfam IPR001304 EMBL-EBI C-type lectin 3.1E-5
Pfam IPR001304 EMBL-EBI C-type lectin 3.1E-5
Sequence
Target Sequence 
>C. ELEGANS:180995_AT
attgttgacggagcagccggcctatttggaccaggatttgtctacagatggcctaatgga
aaaatcgtaagatactctaactgggccaatggaaatggcctggaagaagttggaagttcc
aattcaaataaatgtattaatatcaaaagtgatggtcattggatgaatgctaattgttcc
tctactgctgcagtgatttggttcgaacatcgtcaggatgccatgcttacaagtattgaa
agcgaaagcgagaatcagtttgtgatgaatttggcgaaagaaaaagacgcaaattttgag
ttcatctatctaggcggttatggtagatctcgaaatggaaataagtggcattggatggat
ggctctgaattcaactatatgaattgggaccgagggatgccattcggtcggagagcactg
gcggttcttgtcatgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGTTGACGGAGCAGCCGGCCTAT 160 3 136 Antisense
CAGCCGGCCTATTTGGACCAGGATT 209 203 149 Antisense
GTAAGATACTCTAACTGGGCCAATG 645 459 202 Antisense
ACTGCTGCAGTGATTTGGTTCGAAC 285 99 319 Antisense
CATCGTCAGGATGCCATGCTTACAA 213 211 343 Antisense
TTGAGTTCATCTATCTAGGCGGTTA 102 699 431 Antisense
TAGGCGGTTATGGTAGATCTCGAAA 664 653 446 Antisense
GGATGGATGGCTCTGAATTCAACTA 279 515 488 Antisense
GAATTGGGACCGAGGGATGCCATTC 702 321 516 Antisense
GATGCCATTCGGTCGGAGAGCACTG 462 415 531 Antisense
AGCACTGGCGGTTCTTGTCATGAAC 16 77 549 Antisense
Sequence Source Affymetrix Proprietary Database