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[180994_at]

Description C10G8.3 /REP_DB=WormBase Gene ID /WP=CE20494 /TR=Q94163 /GB=AAD31051.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 25      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 45.3
(-3)
A 		152.6
(0.7)
A 		126.6
(-0.2)
M 		218.4
(3)
A 		173
B 69
(-3)
A 		146.5
(3)
A 		140.6
(2.5)
A 		71.2
(-2.8)
A 		78
C 93.1
(-2.7)
A 		142.1
(0.3)
A 		88.9
(-3)
A 		185.3
(3)
A 		96
avr 69.1
(-3) 		147.1
(2.2) 		118.7
(0.3) 		158.3
(3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 448
1 2 3 4 5 6 range
A 178.8
(-2)
A 		114.5
(-3)
M 		281.8
(-0.4)
P 		506.5
(3)
P 		420.5
(1.7)
P 		115
(-3)
P 		392
B 119.4
(-2.8)
A 		124.7
(-2.7)
M 		235
(-1.2)
P 		551.2
(3)
P 		437.5
(1.5)
P 		103
(-3)
A 		448
C 106.4
(-3)
A 		133.1
(-2.6)
A 		142.8
(-2.5)
P 		513.6
(3)
P 		365.9
(0.8)
P 		108.6
(-3)
P 		407
avr 134.9
(-2.6) 		124.1
(-2.8) 		219.9
(-1.4) 		523.8
(3) 		408
(1.3) 		108.9
(-3) 		415
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 16.5
(-3)
A 		33.1
(3)
A 		33.1
(3)
M 		32
(2.6)
A 		17
B 22
(-1.1)
A 		36.2
(3)
A 		32.6
(2)
A 		15.2
(-3)
A 		21
C 30.8
(-3)
A 		40.9
(3)
A 		31
(-2.9)
A 		31.2
(-2.8)
A 		10
avr 23.1
(-3) 		36.7
(3) 		32.2
(1) 		26.1
(-1.7) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 33
(-2.7)
A 		40.7
(-2.2)
M 		61.4
(-1)
P 		128.5
(3)
P 		126.9
(2.9)
P 		28
(-3)
P 		101
B 41.6
(-2.9)
A 		41.5
(-2.9)
M 		57.1
(-2.2)
P 		146
(1.6)
P 		177.7
(3)
P 		38.4
(-3)
A 		139
C 39.4
(-2.8)
A 		40.6
(-2.7)
A 		36.4
(-3)
P 		103.3
(1.9)
P 		118.4
(3)
P 		36.4
(-3)
P 		82
avr 38
(-2.8) 		40.9
(-2.6) 		51.6
(-2) 		125.9
(2.2) 		141
(3) 		34.3
(-3) 		107
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180994_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12470
Sequence Type Exemplar sequence
Representative Public ID C10G8.3 NCBI
Target Description C10G8.3 /REP_DB=WormBase Gene ID /WP=CE20494 /TR=Q94163 /GB=AAD31051.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072016(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072016 NCBI Caenorhabditis elegans C10G8.3 (C10G8.3) mRNA, complete cds. 11/11 None
SNAP00000038002 ENSEMBL cdna:SNAP chromosome:CEL140:V:5312699:5314101:1 11/11 None
C10G8.3 ENSEMBL cdna:known chromosome:CEL140:V:5312702:5314101:1 gene:C10G8.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000038010 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5312701-5314101(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C10G8.3
Entrez Gene 182502 Entrez gene
SwissProt Q94163 EMBL-EBI
WormBase CE20494 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD31051 Hypothetical protein C10G8.3 [Caenorhabditis elegans] ref|NP_504417.1| C10G8.3 [Caenorhabditis elegans] 1.0E-119
blast CAE62636 Hypothetical protein CBG06766 [Caenorhabditis briggsae] 5.0E-87
blast D89046 protein C10G8.3 [imported] - Caenorhabditis elegans 8.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.3E-10
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 2.3E-10
Sequence
Target Sequence 
>C. ELEGANS:180994_AT
ttgcaatctatcttaactcagctgaagcagggaaagagcatattgccggagcctgccatg
accctttcttcctaggagataccccttgtgacaaacagtggtcaataagatactacatgg
acgttcccaccgagacatgtctcgcattcaactacacaggctgtggccacaattggaata
attttgccacgtcacaagcatgttatgaagagtgtctgcctttggatcatcacaaatgtc
cagcggctagcaaaattcataaaacaaccaaagggaagactgtctgcaacgatgactgtg
attgtgatgcgggaaattattgtaatattggacaagcttatgggcattgttgcgagaaag
agtttaaagacaaagttgacaacgactacaatcccccgtgcccaataggacagacaattg
tacgggagaaaatccacggaatcaccgttcaacttcttggaaaacgatgtcttcataatt
tctgtccatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCAATCTATCTTAACTCAGCTGA 702 701 44 Antisense
AAAGAGCATATTGCCGGAGCCTGCC 626 121 76 Antisense
ATGACCCTTTCTTCCTAGGAGATAC 199 41 101 Antisense
CGTTCCCACCGAGACATGTCTCGCA 51 247 165 Antisense
ATGTCTCGCATTCAACTACACAGGC 122 47 180 Antisense
AATTTTGCCACGTCACAAGCATGTT 538 175 223 Antisense
GAAGAGTGTCTGCCTTTGGATCATC 265 339 250 Antisense
GATCATCACAAATGTCCAGCGGCTA 303 421 268 Antisense
CCCCGTGCCCAATAGGACAGACAAT 620 261 437 Antisense
GAATCACCGTTCAACTTCTTGGAAA 411 327 482 Antisense
GATGTCTTCATAATTTCTGTCCATT 612 409 509 Antisense
Sequence Source Affymetrix Proprietary Database