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[180993_at]

Description C31H1.1 /REP_DB=WormBase Gene ID /WP=CE04122 /TR=Q18340 /GB=AAA83609.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 28      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 58.5
(-1.7)
A 		60
(-1.6)
A 		45.7
(-3)
P 		107.1
(3)
A 		61
B 53.9
(2.3)
A 		60.4
(3)
A 		7.1
(-3)
A 		56.8
(2.6)
M 		53
C 48.5
(-1.5)
A 		71
(0.1)
A 		28.2
(-3)
A 		110.2
(3)
P 		82
avr 53.6
(-0.5) 		63.8
(0.4) 		27
(-3) 		91.4
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 43.4
(-2.5)
A 		40.5
(-2.6)
A 		37.1
(-2.7)
A 		30.8
(-3)
A 		104.6
(0.1)
P 		171.5
(3)
P 		141
B 50.7
(-3)
A 		62.1
(-2.3)
A 		58.7
(-2.5)
A 		53.4
(-2.8)
A 		141.1
(2.2)
P 		154.2
(3)
P 		104
C 6.4
(-3)
A 		47.9
(-1.2)
A 		37.6
(-1.6)
A 		50.4
(-1.1)
A 		120.6
(2)
P 		143
(3)
P 		137
avr 33.5
(-3) 		50.2
(-2.2) 		44.5
(-2.5) 		44.9
(-2.4) 		122.1
(1.3) 		156.2
(3) 		123
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 21.3
(3)
A 		13
(-2.3)
A 		11.9
(-3)
P 		15.7
(-0.6)
A 		9
B 17.2
(3)
A 		14.9
(2.1)
A 		1.7
(-3)
A 		12.1
(1)
M 		16
C 16.1
(0.6)
A 		20.4
(3)
A 		9.8
(-3)
A 		18.6
(2)
P 		11
avr 18.2
(3) 		16.1
(1.8) 		7.8
(-3) 		15.5
(1.4) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 8
(-3)
A 		14.4
(-1.8)
A 		8.1
(-2.9)
A 		7.8
(-3)
A 		31.6
(1.2)
P 		41.8
(3)
P 		34
B 17.7
(-2.5)
A 		20.7
(-2.1)
A 		14.3
(-3)
A 		14.1
(-3)
A 		57.3
(3)
P 		57.5
(3)
P 		43
C 2.4
(-3)
A 		14.6
(-1.4)
A 		9.6
(-2.1)
A 		10.1
(-2)
A 		39
(1.8)
P 		47.9
(3)
P 		46
avr 9.4
(-3) 		16.6
(-1.9) 		10.7
(-2.8) 		10.7
(-2.8) 		42.6
(2) 		49.1
(3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180993_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10572
Sequence Type Exemplar sequence
Representative Public ID C31H1.1 NCBI
Target Description C31H1.1 /REP_DB=WormBase Gene ID /WP=CE04122 /TR=Q18340 /GB=AAA83609.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068464(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068464 NCBI Caenorhabditis elegans C31H1.1 (C31H1.1) mRNA, complete cds. 11/11 None
SNAP00000016609 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5797506:5800142:1 11/11 None
GENEFINDER00000016618 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5797506:5800142:1 11/11 None
C31H1.1 ENSEMBL cdna:known chromosome:CEL140:IV:5797039:5800142:1 gene:C31H1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5797044-5800148(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C31H1.1
Entrez Gene 183094 Entrez gene
SwissProt Q18340 EMBL-EBI
WormBase CE04122 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83609 Hypothetical protein C31H1.1 [Caenorhabditis elegans] ref|NP_500865.1| C31H1.1 [Caenorhabditis elegans] 0.0
blast CAA94377 Hypothetical protein T25B9.6 [Caenorhabditis elegans] ref|NP_501995.2| T25B9.6 [Caenorhabditis elegans] 3.0E-83
blast CAE64503 Hypothetical protein CBG09230 [Caenorhabditis briggsae] 8.0E-83
blast CAA94377 Hypothetical protein T25B9.6 [Caenorhabditis elegans] ref|NP_501995.2| T25B9.6 [Caenorhabditis elegans] 7.0E-82
blast CAA94377 Hypothetical protein T25B9.6 [Caenorhabditis elegans] ref|NP_501995.2| T25B9.6 [Caenorhabditis elegans] 8.0E-82
blast CAE64503 Hypothetical protein CBG09230 [Caenorhabditis briggsae] 2.0E-79
Sequence
Target Sequence 
>C. ELEGANS:180993_AT
gggattctgcttcaaacatttctcaatggtctacctactcggatggtcactccagtgtgc
agtcacttcgcgagcaaatgtccttgtcttcgtatgagcttcgctcgtcctctggccact
cgacactttcttctctctccaccagttccatgccggacaatatgtctgagattccgtgca
agaactattcaaccaattccatgaagactgccttttcaaacggtagctcagttgtcagtg
ttccaccaagatcgtttgatgagaaatcaatgctccaatctgccactggaactcgtacgg
attcggcttctttcaatttttctagtgtttctcttggtgagatagttgaggatgcacttc
atactgcaaaggatgttgcacattgggaaaaccgtttcactatcttattgaccaactttt
taattttctttccagctgaaactcaagcttctcatttgtttgatgctcttcaaaactcgg
ctcagaaatgcggagttgctcttagtgacctgatgaccgctgtctccaccagctcatata
gtcttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGATTCTGCTTCAAACATTTCTCA 561 495 1508 Antisense
ATGGTCTACCTACTCGGATGGTCAC 344 49 1533 Antisense
GATGGTCACTCCAGTGTGCAGTCAC 112 409 1549 Antisense
GTCACTTCGCGAGCAAATGTCCTTG 70 465 1569 Antisense
AATGTCCTTGTCTTCGTATGAGCTT 577 163 1584 Antisense
GACTGCCTTTTCAAACGGTAGCTCA 160 375 1713 Antisense
ACGGTAGCTCAGTTGTCAGTGTTCC 495 95 1727 Antisense
GAAATCAATGCTCCAATCTGCCACT 390 363 1770 Antisense
GCCACTGGAACTCGTACGGATTCGG 333 279 1789 Antisense
TGCTCTTAGTGACCTGATGACCGCT 19 581 2004 Antisense
TCTCCACCAGCTCATATAGTCTTGA 362 609 2030 Antisense
Sequence Source Affymetrix Proprietary Database