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[180992_s_at]

Description F20E11.4 /REP_DB=WormBase Gene ID /WP=CE18613 /TR=Q9XV82 /GB=CAB04143.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 03      6grp_cgc > 37      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 8.5
(-2.6)
A 		3.6
(-3)
A 		3.3
(-3)
A 		80.3
(3)
A 		77
B 30.6
(0.7)
A 		5.4
(-2.6)
A 		2.4
(-3)
A 		48.7
(3)
A 		46
C 11.5
(-2.8)
A 		19
(-2.5)
A 		7.2
(-3)
A 		136.9
(3)
A 		130
avr 16.9
(-2.1) 		9.3
(-2.6) 		4.3
(-3) 		88.6
(3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 11
(3)
A 		4.3
(-2.4)
A 		9.9
(2.1)
A 		5.5
(-1.5)
A 		4.9
(-1.9)
A 		3.6
(-3)
A 		7
B 4.4
(-0.4)
A 		7.1
(3)
A 		2.4
(-3)
A 		5.3
(0.7)
A 		4.3
(-0.6)
A 		2.7
(-2.6)
A 		5
C 2.5
(-3)
A 		3
(-2.8)
A 		2.4
(-3)
A 		6.4
(-2)
A 		2.8
(-2.9)
A 		25.6
(3)
A 		23
avr 6
(-1.2) 		4.8
(-2.3) 		4.9
(-2.2) 		5.7
(-1.5) 		4
(-3) 		10.6
(3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 3.1
(-1.7)
A 		0.8
(-3)
A 		0.9
(-2.9)
A 		11.8
(3)
A 		11
B 9.8
(2.6)
A 		1.3
(-2.6)
A 		0.6
(-3)
A 		10.4
(3)
A 		10
C 3.8
(-2.6)
A 		5.5
(-2.1)
A 		2.5
(-3)
A 		23.1
(3)
A 		21
avr 5.6
(-1.1) 		2.5
(-2.5) 		1.3
(-3) 		15.1
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 2
(2.5)
A 		1.5
(-0)
A 		2.1
(3)
A 		1.4
(-0.5)
A 		1.5
(-0)
A 		0.9
(-3)
A 		1
B 1.5
(0)
A 		2.4
(3)
A 		0.6
(-3)
A 		1.4
(-0.3)
A 		1.7
(0.7)
A 		1
(-1.7)
A 		2
C 0.9
(-2.8)
A 		0.9
(-2.8)
A 		0.6
(-3)
A 		1.3
(-2.5)
A 		0.9
(-2.8)
A 		8.6
(3)
A 		8
avr 1.5
(-2) 		1.6
(-1.8) 		1.1
(-3) 		1.4
(-2.3) 		1.4
(-2.3) 		3.5
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180992_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13743
Sequence Type Exemplar sequence
Representative Public ID F20E11.4 NCBI
Target Description F20E11.4 /REP_DB=WormBase Gene ID /WP=CE18613 /TR=Q9XV82 /GB=CAB04143.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074952(11), NM_075017(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074952 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-199) (str-199) mRNA, complete cds. 11/11 A 
NM_075017 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-200) (str-200) mRNA, complete cds. 11/11 A 
GENEFINDER00000011468 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17190203:17193076:-1 9/11 None
SNAP00000027629 ENSEMBL cdna:SNAP chromosome:CEL140:V:17459196:17459751:-1 11/11 None
GENEFINDER00000027642 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17457817:17462452:-1 9/11 None
Y68A4A.3 ENSEMBL cdna:known chromosome:CEL140:V:17191764:17193076:-1 gene:Y68A4A.3 11/11 A 
F20E11.4 ENSEMBL cdna:known chromosome:CEL140:V:17459196:17460746:-1 gene:F20E11.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17459195-17460746(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Gene Symbol str-200
str-199
Ensembl Y68A4A.3
F20E11.4
Entrez Gene 184732 Entrez gene
190524 Entrez gene
SwissProt Q9XV82 EMBL-EBI
Q9XXP8 EMBL-EBI
WormBase CE18613 Wormbase
CE19255 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16421 Hypothetical protein Y68A4A.3 [Caenorhabditis elegans] ref|NP_507353.1| Seven TM Receptor family member (str-199) [Caenorhabditis elegans] 0.0
blast CAB04143 Hypothetical protein F20E11.4 [Caenorhabditis elegans] ref|NP_507418.1| Seven TM Receptor family member (str-200) [Caenorhabditis elegans] 1.0E-177
blast CAA16421 Hypothetical protein Y68A4A.3 [Caenorhabditis elegans] ref|NP_507353.1| Seven TM Receptor family member (str-199) [Caenorhabditis elegans] 1.0E-162
blast CAB04143 Hypothetical protein F20E11.4 [Caenorhabditis elegans] ref|NP_507418.1| Seven TM Receptor family member (str-200) [Caenorhabditis elegans] 1.0E-152
blast CAA16421 Hypothetical protein Y68A4A.3 [Caenorhabditis elegans] ref|NP_507353.1| Seven TM Receptor family member (str-199) [Caenorhabditis elegans] 1.0E-147
blast CAB04143 Hypothetical protein F20E11.4 [Caenorhabditis elegans] ref|NP_507418.1| Seven TM Receptor family member (str-200) [Caenorhabditis elegans] 1.0E-147
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.3E-9
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.2E-14
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.5E-9
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.5E-12
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.4E-13
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 7.1E-7
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.9E-18
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 7.8E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507353.1 7 5-22,34-53,81-103,124-146,201-223,243-265,275-297
NP_507418.1 7 5-22,34-53,81-103,124-146,191-213,246-268,278-300
Y68A4A.3 7 5-22,34-53,81-103,124-146,201-223,243-265,275-297
F20E11.4 7 5-22,34-53,81-103,124-146,191-213,246-268,278-300
GENEFINDER00000011468 7 5-22,34-53,81-103,124-146,184-206,226-248,258-280
SNAP00000027629 3 35-57,90-112,122-144
GENEFINDER00000027642 12 15-34,41-63,95-112,132-154,174-193,206-228,243-262,282-304,349-371,404-426,436-458,465-487
Sequence
Target Sequence 
>C. ELEGANS:180992_S_AT
tcctatcccgacactatatcatttgtgggtattggtattatgtctctaattcttagttct
tcgttttcgaatgttatttattttggaatcaaatgctacaactatatatcccagcagctc
ggagagctatctacacagtcccaggcaataaagtctcttcaagctcaacttttctactct
ttaatctttcaattcgcaattccttgtctcttaatgtacttgcctgccgggacgattttc
atgattactatgtttgatctcggttttgatatggaatttccactcctttccttcaccgtt
gcaatttacccagcaattgacccacttccaactatttttataattaagagttataggaga
gggctgattggtatgctcacttgtcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTATCCCGACACTATATCATTTG 618 591 568 Antisense
CGGAGAGCTATCTACACAGTCCCAG 326 243 687 Antisense
CGCAATTCCTTGTCTCTTAATGTAC 451 253 762 Antisense
TTGTCTCTTAATGTACTTGCCTGCC 259 705 771 Antisense
TTGCCTGCCGGGACGATTTTCATGA 150 701 787 Antisense
GCCGGGACGATTTTCATGATTACTA 151 279 793 Antisense
ATTACTATGTTTGATCTCGGTTTTG 424 13 811 Antisense
GTTTGATCTCGGTTTTGATATGGAA 318 451 819 Antisense
ATATGGAATTTCCACTCCTTTCCTT 58 23 836 Antisense
GGAGAGGGCTGATTGGTATGCTCAC 324 519 923 Antisense
GCTGATTGGTATGCTCACTTGTCGC 504 295 930 Antisense
Sequence Source Affymetrix Proprietary Database