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[180991_at]

Description F20E11.4 /REP_DB=WormBase Gene ID /WP=CE18613 /TR=Q9XV82 /GB=CAB04143.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 06      6grp_cgc > 95      6grp_cgc_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 3.4
(-3)
A 		7.2
(-2.6)
A 		11.7
(-2.1)
A 		61.6
(3)
A 		58
B 26.4
(1.4)
A 		17.9
(-3)
A 		27.7
(2.1)
A 		29.4
(3)
A 		12
C 41.8
(3)
A 		2.9
(-2.9)
A 		2.5
(-3)
A 		6.7
(-2.4)
A 		39
avr 23.9
(0.8) 		9.3
(-3) 		14
(-1.8) 		32.6
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 3.8
(-0.3)
A 		2.7
(-2.2)
A 		2.8
(-2)
A 		4.1
(0.2)
A 		2.2
(-3)
A 		5.8
(3)
A 		4
B 10
(2.6)
A 		4.6
(-1.1)
A 		1.9
(-3)
A 		3
(-2.2)
A 		2.5
(-2.6)
A 		10.6
(3)
A 		9
C 3.6
(-2.8)
A 		7.4
(-2.5)
A 		5.2
(-2.7)
A 		73.1
(3)
A 		3
(-2.9)
A 		1.6
(-3)
A 		72
avr 5.8
(-2.2) 		4.9
(-2.4) 		3.3
(-2.8) 		26.7
(3) 		2.6
(-3) 		6
(-2.2) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.2
(-3)
A 		1.6
(-2.7)
A 		3
(-1.6)
A 		9
(3)
A 		8
B 8.4
(3)
A 		4.4
(-3)
A 		6.4
(0)
A 		6.3
(-0.2)
A 		4
C 13.8
(3)
A 		0.8
(-3)
A 		0.9
(-3)
A 		1.1
(-2.9)
A 		13
avr 7.8
(3) 		2.3
(-3) 		3.4
(-1.8) 		5.5
(0.5) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.7
(-2.3)
A 		1
(0)
A 		0.6
(-3)
A 		1
(0)
A 		0.7
(-2.3)
A 		1.4
(3)
A 		1
B 3.5
(2.1)
A 		1.5
(-1.3)
A 		0.5
(-3)
A 		0.8
(-2.5)
A 		1
(-2.1)
A 		4
(3)
A 		4
C 1.3
(-2.7)
A 		2.3
(-2.2)
A 		1.3
(-2.7)
A 		14.7
(3)
A 		1
(-2.8)
A 		0.5
(-3)
A 		14
avr 1.8
(-1.7) 		1.6
(-2) 		0.8
(-3) 		5.5
(3) 		0.9
(-2.9) 		2
(-1.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180991_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13743
Sequence Type Exemplar sequence
Representative Public ID F20E11.4 NCBI
Target Description F20E11.4 /REP_DB=WormBase Gene ID /WP=CE18613 /TR=Q9XV82 /GB=CAB04143.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075017(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075017 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-200) (str-200) mRNA, complete cds. 11/11 A 
GENEFINDER00000027642 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17457817:17462452:-1 11/11 None
F20E11.4 ENSEMBL cdna:known chromosome:CEL140:V:17459196:17460746:-1 gene:F20E11.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027629 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17459195-17460746(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-200
Ensembl F20E11.4
Entrez Gene 184732 Entrez gene
SwissProt Q9XV82 EMBL-EBI
WormBase CE18613 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04143 Hypothetical protein F20E11.4 [Caenorhabditis elegans] ref|NP_507418.1| Seven TM Receptor family member (str-200) [Caenorhabditis elegans] 1.0E-177
blast CAA16421 Hypothetical protein Y68A4A.3 [Caenorhabditis elegans] ref|NP_507353.1| Seven TM Receptor family member (str-199) [Caenorhabditis elegans] 1.0E-147
blast CAB04142 Hypothetical protein F20E11.1 [Caenorhabditis elegans] ref|NP_507419.1| Serpentine Receptor, class Z family member (srz-48) [Caenorhabditis elegans] 1.0E-135
blast CAB04143 Hypothetical protein F20E11.4 [Caenorhabditis elegans] ref|NP_507418.1| Seven TM Receptor family member (str-200) [Caenorhabditis elegans] 1.0E-118
blast CAA16420 Hypothetical protein Y68A4A.2 [Caenorhabditis elegans] ref|NP_507354.2| Serpentine Receptor, class Z family member (srz-47) [Caenorhabditis elegans] 1.0E-113
blast CAB03803 Hypothetical protein B0391.3 [Caenorhabditis elegans] ref|NP_506883.1| B0391.3 [Caenorhabditis elegans] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.2E-14
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.4E-13
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 7.1E-7
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.9E-18
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 7.8E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507418.1 7 5-22,34-53,81-103,124-146,191-213,246-268,278-300
F20E11.4 7 5-22,34-53,81-103,124-146,191-213,246-268,278-300
GENEFINDER00000027642 12 15-34,41-63,95-112,132-154,174-193,206-228,243-262,282-304,349-371,404-426,436-458,465-487
Sequence
Target Sequence 
>C. ELEGANS:180991_AT
ggctggaaacaaactcttctttacattgttccagtttgttgtggtgttatttgggggatg
atttgcgggatagctttaagcgaatcttcattgaagtctgcctttttgagaatgtatttc
caggaagcttttaatttgaaaattgaggaatgcgtctacgttgcttcttatttttggcca
cttgatgatcacggtgtttcctatcccgacactatatcatttgtgggtattggtattatg
tctctaattcttagttcttcgttttcgaatgttatttattttggaatcaaatgctacaac
tatatatcccagcagctcggagagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTGGAAACAAACTCTTCTTTACA 360 537 370 Antisense
ACAAACTCTTCTTTACATTGTTCCA 21 113 378 Antisense
TTTGTTGTGGTGTTATTTGGGGGAT 8 661 404 Antisense
TTGGGGGATGATTTGCGGGATAGCT 670 707 420 Antisense
ATAGCTTTAAGCGAATCTTCATTGA 131 23 439 Antisense
TCTTCATTGAAGTCTGCCTTTTTGA 65 617 454 Antisense
TCTTATTTTTGGCCACTTGATGATC 493 615 535 Antisense
GCCACTTGATGATCACGGTGTTTCC 312 279 546 Antisense
TCTAATTCTTAGTTCTTCGTTTTCG 579 613 612 Antisense
CAAATGCTACAACTATATATCCCAG 578 193 657 Antisense
ATATATCCCAGCAGCTCGGAGAGCT 31 21 671 Antisense
Sequence Source Affymetrix Proprietary Database