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[180990_at]

Description F14B8.4 /REP_DB=WormBase Gene ID /WP=CE02647 /TR=Q19441 /GB=AAA68271.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 33      4grp_high_8_8 > 53      6grp_highest_nonorm > 81      6grp_total > 0      4grp_total > 58      6grp_total_sub > Hat      6grp_high1_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 617
1 2 3 4 range
A 240.7
(-1.1)
P 		547.7
(2.9)
P 		553.1
(3)
P 		90.3
(-3)
P 		463
B 175.6
(-1.4)
P 		628.2
(3)
P 		579.2
(2.5)
P 		11.5
(-3)
A 		617
C 267.5
(-1)
P 		609.7
(3)
P 		515.5
(1.9)
P 		98.2
(-3)
A 		512
avr 227.9
(-1.2) 		595.2
(3) 		549.3
(2.5) 		66.7
(-3) 		529

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 383
1 2 3 4 5 6 range
A 197.3
(-2)
P 		377.8
(3)
P 		285.7
(0.4)
P 		201
(-1.9)
P 		317.8
(1.3)
P 		162
(-3)
P 		216
B 158.9
(-3)
P 		515.7
(3)
P 		271
(-1.1)
P 		223.6
(-1.9)
P 		345.1
(0.1)
P 		161.4
(-3)
P 		357
C 145.7
(-3)
P 		528.4
(3)
P 		263.3
(-1.2)
P 		193.7
(-2.2)
P 		349.4
(0.2)
P 		149.3
(-2.9)
P 		383
avr 167.3
(-2.8) 		474
(3) 		273.3
(-0.8) 		206.1
(-2.1) 		337.4
(0.4) 		157.6
(-3) 		316
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 177
1 2 3 4 range
A 87.6
(0.4)
P 		118.9
(1.8)
P 		144.6
(3)
P 		13.2
(-3)
P 		131
B 56
(-0.9)
P 		155.1
(3)
P 		134.2
(2.2)
P 		2.5
(-3)
A 		153
C 88.5
(-0.4)
P 		175.3
(2.8)
P 		179.7
(3)
P 		16.6
(-3)
A 		163
avr 77.4
(-0.2) 		149.8
(2.9) 		152.8
(3) 		10.8
(-3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 36.4
(-3)
P 		134.4
(3)
P 		62.2
(-1.4)
P 		51
(-2.1)
P 		95.9
(0.6)
P 		39.4
(-2.8)
P 		98
B 55.3
(-3)
P 		171.7
(3)
P 		65.8
(-2.5)
P 		59.2
(-2.8)
P 		140.2
(1.4)
P 		60.2
(-2.7)
P 		116
C 54
(-2.3)
P 		161.2
(3)
P 		67
(-1.6)
P 		38.9
(-3)
P 		113.1
(0.6)
P 		50
(-2.5)
P 		122
avr 48.6
(-3) 		155.8
(3) 		65
(-2.1) 		49.7
(-2.9) 		116.4
(0.8) 		49.9
(-2.9) 		107
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180990_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16793
Sequence Type Exemplar sequence
Representative Public ID F14B8.4 NCBI
Target Description F14B8.4 /REP_DB=WormBase Gene ID /WP=CE02647 /TR=Q19441 /GB=AAA68271.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076765(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076765 NCBI Caenorhabditis elegans F14B8.4 (F14B8.4) mRNA, complete cds. 11/11 None
SNAP00000027537 ENSEMBL cdna:SNAP chromosome:CEL140:X:6898648:6899876:-1 11/11 None
GENEFINDER00000027546 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6898648:6899876:-1 11/11 None
F14B8.4 ENSEMBL cdna:known chromosome:CEL140:X:6898648:6899900:-1 gene:F14B8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6898647-6899900(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F14B8.4
Entrez Gene 184451 Entrez gene
SwissProt Q19441 EMBL-EBI
WormBase CE02647 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68271 Hypothetical protein F14B8.4 [Caenorhabditis elegans] ref|NP_509166.1| F14B8.4 [Caenorhabditis elegans] 1.0E-65
blast AAA68271 Hypothetical protein F14B8.4 [Caenorhabditis elegans] ref|NP_509166.1| F14B8.4 [Caenorhabditis elegans] 4.0E-61
blast CAE65815 Hypothetical protein CBG10926 [Caenorhabditis briggsae] 2.0E-55
blast CAE65815 Hypothetical protein CBG10926 [Caenorhabditis briggsae] 2.0E-51
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509166.1 1 10-29
F14B8.4 1 10-29
Sequence
Target Sequence 
>C. ELEGANS:180990_AT
acagctgtttatcttctcactagttgccgcgtactgcaatccagcattgtatgatgatta
tagacatgctcaattcgttcgtgattgggctgctcattgcgtcgacaagtacctgccaac
gtatgatgctttagaaattggaccagaaattcgaaagtgcgacaccgagagatgtgtcta
tttcatgtacaagtacattgctgacaactgcccagaaaagtttcttgaatttgacatttg
ttttgaaacaaatactgccaaaaaacaatccagaacgccatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGCTGTTTATCTTCTCACTAGTT 191 109 48 Antisense
TCACTAGTTGCCGCGTACTGCAATC 293 627 64 Antisense
GCGTACTGCAATCCAGCATTGTATG 688 291 76 Antisense
TATAGACATGCTCAATTCGTTCGTG 388 659 106 Antisense
CAATTCGTTCGTGATTGGGCTGCTC 637 179 118 Antisense
GCTCATTGCGTCGACAAGTACCTGC 188 301 139 Antisense
ACCTGCCAACGTATGATGCTTTAGA 128 89 158 Antisense
GAAATTCGAAAGTGCGACACCGAGA 149 363 193 Antisense
GAGAGATGTGTCTATTTCATGTACA 591 395 214 Antisense
GTACATTGCTGACAACTGCCCAGAA 607 459 240 Antisense
CAAAAAACAATCCAGAACGCCATCA 448 191 306 Antisense
Sequence Source Affymetrix Proprietary Database