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[180989_at]

Description C05E4.7 /REP_DB=WormBase Gene ID /WP=CE07941 /TR=O17357 /GB=AAB71276.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 7.1
(-2.7)
A 		15.4
(-2)
A 		4.3
(-3)
A 		69.1
(3)
A 		65
B 34.2
(3)
A 		30
(0.2)
A 		25.7
(-2.7)
A 		25.3
(-3)
A 		9
C 20.7
(-3)
A 		24.9
(-2.7)
A 		21.2
(-3)
A 		93.3
(3)
A 		73
avr 20.7
(-2.5) 		23.4
(-2.2) 		17.1
(-3) 		62.6
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 35.8
(1.3)
A 		36.9
(1.5)
A 		37.4
(1.6)
A 		46.5
(3)
A 		27.5
(0)
A 		8.1
(-3)
A 		38
B 20.5
(2.4)
A 		22.3
(3)
A 		15.1
(0.7)
A 		3.6
(-3)
A 		17.2
(1.4)
A 		4
(-2.9)
A 		19
C 26.3
(-0.9)
A 		11.5
(-2.3)
A 		19.8
(-1.5)
A 		65.4
(3)
A 		4.6
(-3)
A 		15.1
(-2)
A 		61
avr 27.5
(0.8) 		23.6
(-0) 		24.1
(0.1) 		38.5
(3) 		16.4
(-1.5) 		9.1
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 2.6
(-2)
A 		3.3
(-1.5)
A 		1.1
(-3)
A 		10.1
(3)
A 		9
B 10.9
(3)
A 		7.4
(-0.8)
A 		5.9
(-2.5)
A 		5.4
(-3)
A 		6
C 6.8
(-3)
A 		7.2
(-2.7)
A 		7.4
(-2.6)
A 		15.7
(3)
A 		9
avr 6.8
(-0.9) 		6
(-1.7) 		4.8
(-3) 		10.4
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 6.6
(-0.5)
A 		13.1
(3)
A 		8.1
(0.3)
A 		11.8
(2.3)
A 		8.3
(0.4)
A 		2
(-3)
A 		11
B 7.1
(2.7)
A 		7.4
(3)
A 		3.7
(-0.5)
A 		1
(-3)
A 		7
(2.6)
A 		1.5
(-2.5)
A 		6
C 9.7
(1.2)
A 		3.5
(-2)
A 		5
(-1.2)
A 		13.1
(3)
A 		1.5
(-3)
A 		5.1
(-1.1)
A 		12
avr 7.8
(2.2) 		8
(2.4) 		5.6
(-0.2) 		8.6
(3) 		5.6
(-0.2) 		2.9
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180989_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14955
Sequence Type Exemplar sequence
Representative Public ID C05E4.7 NCBI
Target Description C05E4.7 /REP_DB=WormBase Gene ID /WP=CE07941 /TR=O17357 /GB=AAB71276.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070910(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070910 NCBI Caenorhabditis elegans C05E4.7 (C05E4.7) mRNA, complete cds. 11/11 None
GENEFINDER00000009769 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:741950:743087:1 11/11 None
C05E4.7 ENSEMBL cdna:known chromosome:CEL140:V:741950:742345:1 gene:C05E4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:741949-742345(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05E4.7
Entrez Gene 182263 Entrez gene
SwissProt O17357 EMBL-EBI
WormBase CE07941 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71276 Hypothetical protein C05E4.7 [Caenorhabditis elegans] ref|NP_503311.1| C05E4.7 [Caenorhabditis elegans] 2.0E-63
blast AAB71276 Hypothetical protein C05E4.7 [Caenorhabditis elegans] ref|NP_503311.1| C05E4.7 [Caenorhabditis elegans] 2.0E-53
blast CAB05782 Hypothetical protein K10H10.9 [Caenorhabditis elegans] ref|NP_497014.1| K10H10.9 [Caenorhabditis elegans] 5.0E-15
blast CAE57938 Hypothetical protein CBG00992 [Caenorhabditis briggsae] 3.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503311.1 1 7-29
C05E4.7 1 7-29
GENEFINDER00000009769 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:180989_AT
tgacaactctactccaattattcactttaattatttatttctctaatattagctgcttta
taattgatagctggaacattgcgttcacctgcggagatcgtcacgttgcaaaagctgatc
tacgtttatatgaatataaagatggaggcttccacaaagaaatttcgagttttcatggtg
tgacagacattcgggggcagtacaaactaaatggagatattttgaaatcgctgagatttg
acacacctagtgctgaatatcgaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACAACTCTACTCCAATTATTCAC 662 571 14 Antisense
ATTTCTCTAATATTAGCTGCTTTAT 621 15 50 Antisense
AGCTGGAACATTGCGTTCACCTGCG 26 81 82 Antisense
ACCTGCGGAGATCGTCACGTTGCAA 678 87 100 Antisense
GCAAAAGCTGATCTACGTTTATATG 348 319 121 Antisense
GGAGGCTTCCACAAAGAAATTTCGA 333 515 157 Antisense
AAATTTCGAGTTTTCATGGTGTGAC 310 115 173 Antisense
ATGGTGTGACAGACATTCGGGGGCA 264 51 188 Antisense
AGACATTCGGGGGCAGTACAAACTA 2 69 198 Antisense
ATCGCTGAGATTTGACACACCTAGT 111 37 240 Antisense
CACACCTAGTGCTGAATATCGAATC 83 195 255 Antisense
Sequence Source Affymetrix Proprietary Database