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[180988_at]

Description Y43F8A.1 /REP_DB=WormBase Gene ID /WP=CE21880 /TR=Q9XWL6 /GB=CAA21640.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 58      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 82      6grp_total > 48      4grp_total > 02      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2584
1 2 3 4 range
A 364
(-2.6)
P 		219.5
(-2.9)
P 		186.8
(-3)
P 		2718.3
(3)
P 		2532
B 222.3
(-2.9)
P 		182
(-3)
P 		186.7
(-3)
P 		1957.7
(3)
P 		1776
C 289.7
(-2.6)
P 		172.8
(-2.9)
P 		134.2
(-3)
P 		2343.3
(3)
P 		2209
avr 292
(-2.7) 		191.4
(-2.9) 		169.2
(-3) 		2339.8
(3) 		2171

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 329
1 2 3 4 5 6 range
A 496.1
(3)
P 		336.7
(-0.6)
P 		439.3
(1.7)
P 		231.8
(-3)
P 		322.7
(-0.9)
P 		415.1
(1.2)
P 		264
B 444.5
(1.7)
P 		345.9
(-0.5)
P 		279.2
(-2)
P 		234.1
(-3)
P 		352.9
(-0.3)
P 		502.2
(3)
P 		268
C 381.9
(0.5)
P 		407.6
(0.9)
P 		192.1
(-3)
P 		305.2
(-0.9)
P 		281.3
(-1.4)
P 		521.5
(3)
P 		329
avr 440.8
(2) 		363.4
(-0.1) 		303.5
(-1.7) 		257
(-3) 		319
(-1.3) 		479.6
(3) 		223
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 374
1 2 3 4 range
A 132.5
(-1.5)
P 		47.6
(-3)
P 		48.8
(-3)
P 		397.9
(3)
P 		350
B 70.9
(-2.6)
P 		45
(-3)
P 		43.3
(-3)
P 		417.2
(3)
P 		374
C 95.9
(-2.2)
P 		49.7
(-3)
P 		46.8
(-3)
P 		395.1
(3)
P 		348
avr 99.8
(-2.1) 		47.4
(-3) 		46.3
(-3) 		403.4
(3) 		357

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 91.4
(0.2)
P 		119.7
(3)
P 		95.7
(0.6)
P 		58.8
(-3)
P 		97.4
(0.8)
P 		101.1
(1.2)
P 		61
B 154.7
(1.4)
P 		115.1
(-0.5)
P 		67.8
(-2.7)
P 		62
(-3)
P 		143.4
(0.9)
P 		187.3
(3)
P 		125
C 141.6
(1.4)
P 		124.4
(0.6)
P 		48.9
(-3)
P 		61.4
(-2.4)
P 		91
(-1)
P 		174.6
(3)
P 		126
avr 129.2
(1.4) 		119.7
(0.8) 		70.8
(-2.4) 		60.7
(-3) 		110.6
(0.2) 		154.3
(3) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180988_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12618
Sequence Type Exemplar sequence
Representative Public ID Y43F8A.1 NCBI
Target Description Y43F8A.1 /REP_DB=WormBase Gene ID /WP=CE21880 /TR=Q9XWL6 /GB=CAA21640.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075368(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075368 NCBI Caenorhabditis elegans Y43F8A.1 (Y43F8A.1) mRNA, complete cds. 11/11 None
GENEFINDER00000034974 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19373175:19373904:1 11/11 None
Y43F8A.1 ENSEMBL cdna:known chromosome:CEL140:V:19373175:19373904:1 gene:Y43F8A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19373174-19373904(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F8A.1
Entrez Gene 189865 Entrez gene
SwissProt Q9XWL6 EMBL-EBI
WormBase CE21880 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21640 Hypothetical protein Y43F8A.1 [Caenorhabditis elegans] ref|NP_507769.1| Y43F8A.1 [Caenorhabditis elegans] 2.0E-29
blast CAE61685 Hypothetical protein CBG05630 [Caenorhabditis briggsae] 1.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507769.1 1 5-24
Y43F8A.1 1 5-24
GENEFINDER00000034974 1 5-24
Sequence
Target Sequence 
>C. ELEGANS:180988_AT
tgaaaattgccgttttcctggtggtttttgcactttttattggcgtttttgtgcaaggac
aacgagtttttgatatgatggatgagaaagcttccaacccaggcggtcgttcggcgatct
accagcgaaaatcgtatctccaaccattctacaatgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAAATTGCCGTTTTCCTGGTGGT 467 573 14 Antisense
TGCCGTTTTCCTGGTGGTTTTTGCA 68 585 21 Antisense
TTATTGGCGTTTTTGTGCAAGGACA 267 659 50 Antisense
GTGCAAGGACAACGAGTTTTTGATA 103 481 64 Antisense
ACGAGTTTTTGATATGATGGATGAG 473 93 75 Antisense
GGATGAGAAAGCTTCCAACCCAGGC 16 515 93 Antisense
TCGTTCGGCGATCTACCAGCGAAAA 78 605 120 Antisense
GTTCGGCGATCTACCAGCGAAAATC 419 443 122 Antisense
CAGCGAAAATCGTATCTCCAACCAT 186 203 136 Antisense
AAATCGTATCTCCAACCATTCTACA 417 115 142 Antisense
GTATCTCCAACCATTCTACAATGCT 212 455 147 Antisense
Sequence Source Affymetrix Proprietary Database