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[180987_at]

Description F56B6.3 /REP_DB=WormBase Gene ID /WP=CE04663 /TR=Q22999 /GB=AAB04564.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 06      6grp_cgc > 43      6grp_cgc_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 52.2
(1.4)
P 		28.6
(-3)
A 		50.4
(1.1)
A 		60.6
(3)
A 		32
B 45.2
(0.1)
P 		25.8
(-3)
A 		36.9
(-1.2)
A 		62.8
(3)
A 		37
C 49.3
(0.5)
P 		32
(-1.5)
A 		19.2
(-3)
A 		71.3
(3)
A 		52
avr 48.9
(0.3) 		28.8
(-3) 		35.5
(-1.9) 		64.9
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 26.7
(-0)
A 		47.3
(3)
A 		34
(1.1)
A 		46
(2.8)
A 		6.3
(-3)
A 		10
(-2.5)
A 		41
B 37.1
(1.3)
P 		48.7
(3)
A 		30
(0.3)
A 		7.9
(-3)
A 		48.6
(3)
A 		38.4
(1.5)
A 		41
C 40.4
(2.8)
M 		41.8
(3)
A 		25.5
(0.4)
A 		4.4
(-3)
A 		21.9
(-0.2)
A 		41.6
(3)
A 		37
avr 34.7
(0.5) 		45.9
(3) 		29.8
(-0.6) 		19.4
(-3) 		25.6
(-1.6) 		30
(-0.6) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 19
(3)
P 		6.2
(-3)
A 		13.2
(0.3)
A 		8.9
(-1.7)
A 		13
B 14.4
(3)
P 		6.4
(-3)
A 		8.5
(-1.4)
A 		13.4
(2.3)
A 		8
C 16.3
(3)
P 		9.2
(-1.4)
A 		6.7
(-3)
A 		12
(0.3)
A 		10
avr 16.6
(3) 		7.3
(-3) 		9.5
(-1.6) 		11.4
(-0.4) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 4.9
(-1.8)
A 		16.8
(3)
A 		7.4
(-0.8)
A 		11.7
(0.9)
A 		1.9
(-3)
A 		2.4
(-2.8)
A 		15
B 12.9
(0.7)
P 		16.2
(1.8)
A 		7.3
(-1.2)
A 		2.1
(-3)
A 		19.8
(3)
A 		14.3
(1.1)
A 		18
C 15
(3)
M 		12.7
(2)
A 		6.5
(-0.6)
A 		0.9
(-3)
A 		7.1
(-0.4)
A 		13.9
(2.5)
A 		14
avr 10.9
(0.5) 		15.2
(3) 		7.1
(-1.7) 		4.9
(-3) 		9.6
(-0.3) 		10.2
(0.1) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180987_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18604
Sequence Type Exemplar sequence
Representative Public ID F56B6.3 NCBI
Target Description F56B6.3 /REP_DB=WormBase Gene ID /WP=CE04663 /TR=Q22999 /GB=AAB04564.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000023808 ENSEMBL cdna:SNAP chromosome:CEL140:X:3552491:3552917:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076209 6/11 Cross Hyb Matching Probes A 
NM_001029543 6/11 Cross Hyb Matching Probes None
NM_001029544 6/11 Cross Hyb Matching Probes None
GENEFINDER00000023813 6/11 Cross Hyb Matching Probes None
F56B6.2a 6/11 Cross Hyb Matching Probes A 
F56B6.2b 6/11 Cross Hyb Matching Probes A 
F56B6.2c 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3552491-3552918(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T31003 hypothetical protein F56B6.3 - Caenorhabditis elegans 1.0E-49
blast AAL11463 Regulator of g protein signaling protein 7, isoform c [Caenorhabditis elegans] ref|NP_001024715.1| Regulator of G protein Signaling family member (rgs-7) [Caenorhabditis elegans] 7.0E-41
blast AAS75452 RGS-7A [Caenorhabditis elegans] gb|AAL11462.1| Regulator of g protein signaling protein 7, isoform a [Caenorhabditis elegans] ref|NP_508610.3| Regulator of G protein Signaling family member (rgs-7) [Caenorhabditis elegans] sp|Q8WQC0|RGS7_CAEEL Regulator of G-protein signaling rgs-7 (Regulator of G-protein signaling c2) (Protein C2-RGS) 7.0E-41
Sequence
Target Sequence 
>C. ELEGANS:180987_AT
atggttcagcataatcaaacctcaactgtactttcctatttaggcgagaacaactctgac
gatgcgaagagcctgagtcccgaacaatcgcccacggatcaccacttcttgtgtcctgac
gacaatggaggagtctacggagcagggcccgctcatagtgctattaaaaagagctcggtt
cgtcgtgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGTTCAGCATAATCAAACCTCAA 548 51 13 Antisense
ATCAAACCTCAACTGTACTTTCCTA 150 11 26 Antisense
CTCAACTGTACTTTCCTATTTAGGC 678 227 33 Antisense
GTACTTTCCTATTTAGGCGAGAACA 206 455 40 Antisense
GGCGAGAACAACTCTGACGATGCGA 29 543 55 Antisense
AACTCTGACGATGCGAAGAGCCTGA 659 137 64 Antisense
CCACTTCTTGTGTCCTGACGACAAT 270 275 114 Antisense
GTGTCCTGACGACAATGGAGGAGTC 412 485 123 Antisense
TGGAGGAGTCTACGGAGCAGGGCCC 531 549 138 Antisense
GGCCCGCTCATAGTGCTATTAAAAA 22 543 158 Antisense
TAAAAAGAGCTCGGTTCGTCGTGCA 54 639 177 Antisense
Sequence Source Affymetrix Proprietary Database