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[180986_s_at]

Description C18H7.6 /REP_DB=WormBase Gene ID /WP=CE17431 /TR=Q9GZG2 /GB=AAF98607.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 03      4grp_high_8_8 > 18      6grp_total > 25      4grp_total > 29      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 276.4
(3)
P 		170.7
(-0.4)
P 		90.8
(-3)
M 		270.2
(2.8)
P 		186
B 215.2
(3)
P 		153.7
(0.2)
P 		83.4
(-3)
P 		185.4
(1.6)
P 		132
C 216.8
(2.2)
P 		162.1
(0.1)
P 		82
(-3)
P 		236.6
(3)
P 		155
avr 236.1
(3) 		162.2
(0.1) 		85.4
(-3) 		230.7
(2.8) 		151

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 186.9
(3)
P 		138.1
(0.8)
P 		110.8
(-0.4)
P 		51
(-3)
A 		76.8
(-1.9)
M 		80.9
(-1.7)
P 		136
B 173.4
(3)
P 		140.4
(1)
P 		144.3
(1.2)
P 		94.5
(-1.9)
P 		76.4
(-3)
P 		98.2
(-1.7)
P 		97
C 146.2
(2.5)
P 		153.1
(3)
P 		100.3
(-1.2)
P 		103.8
(-0.9)
A 		77.8
(-3)
P 		100.5
(-1.2)
P 		75
avr 168.8
(3) 		143.9
(1.4) 		118.5
(-0.3) 		83.1
(-2.6) 		77
(-3) 		93.2
(-1.9) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 100.6
(3)
P 		37.1
(-2)
P 		23.7
(-3)
M 		39.6
(-1.8)
P 		77
B 68.6
(3)
P 		38
(-0.7)
P 		19.3
(-3)
P 		39.5
(-0.5)
P 		49
C 71.8
(3)
P 		46.6
(-0.5)
P 		28.6
(-3)
P 		39.9
(-1.4)
P 		43
avr 80.3
(3) 		40.6
(-1.2) 		23.9
(-3) 		39.7
(-1.3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 34.5
(0.6)
P 		49.1
(3)
P 		24.1
(-1.1)
P 		12.9
(-3)
A 		23.2
(-1.3)
M 		19.7
(-1.9)
P 		36
B 60.3
(3)
P 		46.7
(0.7)
P 		35
(-1.3)
P 		25
(-3)
P 		31
(-2)
P 		36.6
(-1)
P 		35
C 54.2
(3)
P 		46.7
(1.6)
P 		25.5
(-2.2)
P 		20.9
(-3)
A 		25.2
(-2.2)
P 		33.6
(-0.7)
P 		33
avr 49.7
(3) 		47.5
(2.6) 		28.2
(-1.3) 		19.6
(-3) 		26.5
(-1.6) 		30
(-0.9) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180986_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11122
Sequence Type Exemplar sequence
Representative Public ID C18H7.6 NCBI
Target Description C18H7.6 /REP_DB=WormBase Gene ID /WP=CE17431 /TR=Q9GZG2 /GB=AAF98607.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067551(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067551 NCBI Caenorhabditis elegans C18H7.6 (C18H7.6) mRNA, complete cds. 11/11 None
SNAP00000042861 ENSEMBL cdna:SNAP chromosome:CEL140:IV:589112:592446:-1 11/11 None
GENEFINDER00000042878 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:589112:592446:-1 11/11 None
C18H7.6 ENSEMBL cdna:known chromosome:CEL140:IV:589099:592446:-1 gene:C18H7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:589117-592452(-) 98.53 100.0
Public Domain and Genome References
Gene Title
Ensembl C18H7.6
Entrez Gene 176886 Entrez gene
SwissProt Q9GZG2 EMBL-EBI
WormBase CE17431 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF98607 Hypothetical protein C18H7.6 [Caenorhabditis elegans] ref|NP_499952.1| C18H7.6 [Caenorhabditis elegans] 0.0
blast CAE58464 Hypothetical protein CBG01604 [Caenorhabditis briggsae] 1.0E-93
blast CAE58464 Hypothetical protein CBG01604 [Caenorhabditis briggsae] 9.0E-93
blast CAE58464 Hypothetical protein CBG01604 [Caenorhabditis briggsae] 1.0E-79
blast CAE58465 Hypothetical protein CBG01605 [Caenorhabditis briggsae] 3.0E-52
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499952.1 5 189-211,382-401,421-439,468-487,502-524
C18H7.6 5 189-211,382-401,421-439,468-487,502-524
SNAP00000042861 7 211-233,246-268,302-324,337-359,379-398,427-446,461-483
GENEFINDER00000042878 7 195-217,230-252,286-308,321-343,363-382,411-430,445-467
Sequence
Target Sequence 
>C. ELEGANS:180986_S_AT
ccaacttttctactgtgctctgatgactggtctcacgttcggatacaccttcttcaaatt
tcacgacttcttgatggtagttcacaaggataacgtcgtagatccaattcatctggatat
ttacgatgccgctgctccattcgtcactgccgtcatatttttctatgcgagacaggcggt
aaaccgtcagtcaacctatgaagccgacagaactggaccaaatgcaccaaacactttgga
tcgtatttcgaaagtcgtgatctttcaagtgatcatggctggtgttgcagtctttgcaag
tttcatgagcttttcagaggacgaagaattaaattttgatccacgtaaatctaacgacac
atactatttcttcatcacagcccaaaccccaatcccaattttcttcctcttcaaatcgct
actccgttctcgcaaatcgaaacggatttgttttcttgtgtgctgtagctcgggagatca
agtcggttccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAACTTTTCTACTGTGCTCTGATG 283 277 1161 Antisense
CTACTGTGCTCTGATGACTGGTCTC 621 225 1170 Antisense
TGACTGGTCTCACGTTCGGATACAC 494 569 1184 Antisense
GGATACACCTTCTTCAAATTTCACG 244 511 1201 Antisense
GTCACTGCCGTCATATTTTTCTATG 561 465 1303 Antisense
AACCGTCAGTCAACCTATGAAGCCG 153 147 1342 Antisense
CATGGCTGGTGTTGCAGTCTTTGCA 341 209 1434 Antisense
GACACATACTATTTCTTCATCACAG 334 367 1516 Antisense
CTACTCCGTTCTCGCAAATCGAAAC 572 223 1579 Antisense
TGTTTTCTTGTGTGCTGTAGCTCGG 271 561 1609 Antisense
GCTCGGGAGATCAAGTCGGTTCCGC 282 299 1628 Antisense
Sequence Source Affymetrix Proprietary Database