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[180985_s_at]

Description F46G10.2 /REP_DB=WormBase Gene ID /WP=CE02238 /TR=Q20477 /GB=CAA90543.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 16      4grp_highest_8_8 > 56      4grp_high_8_8 > 35      6grp_highest_nonorm > 40      6grp_total > 16      4grp_total > 45      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 709
1 2 3 4 range
A 1180.4
(3)
P 		1169.8
(2.9)
P 		766.9
(-2.4)
P 		718.3
(-3)
P 		462
B 1167.9
(3)
P 		1061.6
(1.2)
P 		829.9
(-2.6)
P 		805.1
(-3)
P 		363
C 1427
(3)
P 		1101.5
(0.1)
P 		854.3
(-2)
P 		744.2
(-3)
P 		683
avr 1258.4
(3) 		1111
(1.2) 		817
(-2.3) 		755.9
(-3) 		503

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 402
1 2 3 4 5 6 range
A 902.3
(3)
P 		780.6
(1.2)
P 		527.6
(-2.6)
P 		500.4
(-3)
P 		558.2
(-2.1)
P 		546.8
(-2.3)
P 		402
B 704
(3)
P 		679.1
(2.2)
P 		583.2
(-0.7)
P 		505.8
(-3)
P 		609.7
(0.1)
P 		532.3
(-2.2)
P 		198
C 832.9
(3)
P 		697.6
(0.1)
P 		591.7
(-2.1)
P 		654.6
(-0.8)
P 		549.7
(-3)
P 		562.5
(-2.7)
P 		283
avr 813.1
(3) 		719.1
(0.9) 		567.5
(-2.5) 		553.6
(-2.9) 		572.5
(-2.4) 		547.2
(-3) 		266
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 367
1 2 3 4 range
A 429.8
(3)
P 		253.9
(-0.3)
P 		200.5
(-1.2)
P 		105.1
(-3)
P 		325
B 372.4
(3)
P 		262.2
(-0.3)
P 		192.3
(-2.4)
P 		171.6
(-3)
P 		201
C 472.4
(3)
P 		316.7
(0.3)
P 		297.7
(-0)
P 		125.5
(-3)
P 		347
avr 424.9
(3) 		277.6
(-0) 		230.2
(-1) 		134.1
(-3) 		291

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 166.3
(-1.1)
P 		277.6
(3)
P 		114.9
(-3)
P 		126.9
(-2.6)
P 		168.4
(-1)
P 		133.1
(-2.3)
P 		163
B 244.9
(2.9)
P 		226
(1.9)
P 		141.6
(-2.6)
P 		134
(-3)
P 		247.7
(3)
P 		198.5
(0.4)
P 		114
C 308.7
(3)
P 		212.9
(-0.2)
P 		150.6
(-2.4)
P 		131.6
(-3)
P 		177.9
(-1.4)
P 		188.3
(-1.1)
P 		177
avr 240
(3) 		238.8
(2.9) 		135.7
(-2.7) 		130.8
(-3) 		198
(0.7) 		173.3
(-0.7) 		109
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180985_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17661
Sequence Type Exemplar sequence
Representative Public ID F46G10.2 NCBI
Target Description F46G10.2 /REP_DB=WormBase Gene ID /WP=CE02238 /TR=Q20477 /GB=CAA90543.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077817(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077817 NCBI Caenorhabditis elegans F46G10.2 (F46G10.2) mRNA, complete cds. 11/11 None
GENEFINDER00000042670 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13323079:13327368:1 11/11 None
SNAP00000042663 ENSEMBL cdna:SNAP chromosome:CEL140:X:13323145:13327368:1 11/11 None
F46G10.2 ENSEMBL cdna:known chromosome:CEL140:X:13323047:13327727:1 gene:F46G10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13323078-13327448(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46G10.2
Entrez Gene 181454 Entrez gene
SwissProt Q20477 EMBL-EBI
WormBase CE31521 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90543 Hypothetical protein F46G10.2 [Caenorhabditis elegans] ref|NP_510218.2| F46G10.2 [Caenorhabditis elegans] 0.0
blast CAE63365 Hypothetical protein CBG07774 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510218.2 2 17-39,340-362
F46G10.2 2 17-39,340-362
GENEFINDER00000042670 2 17-39,340-362
SNAP00000042663 1 318-340
Sequence
Target Sequence 
>C. ELEGANS:180985_S_AT
tgcatactaccatccacggtgtggtatctatgacgtcattaacaacttcttcccgtgtac
cgatccgcgattggctcacattgctctcactccagaagcacagcgaagtgtgccgaaaga
agttgaatacgtattgcctcgtgatcagaaacttctagaagatgcatttgatatcactat
cgctgatccacttgtcatagatattcctatcgaggacgtggcaattccagaaaatgtgcc
cattcatcatgagagctgtgacagcattgacagtagaaataactcaaagacgcatagtac
agactcgggtgtctcatcattgtcaagtaatagctcacattcaggaggagataatgaggt
caactctgacaagtggtatgccaactcatttgagagatctaaacatcgaagcccatcctc
tacttcgacagcccgtagaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCATACTACCATCCACGGTGTGGT 181 577 1392 Antisense
CGGTGTGGTATCTATGACGTCATTA 489 243 1408 Antisense
GACGTCATTAACAACTTCTTCCCGT 410 377 1423 Antisense
ACATTGCTCTCACTCCAGAAGCACA 302 105 1469 Antisense
GTATTGCCTCGTGATCAGAAACTTC 208 453 1522 Antisense
ACTATCGCTGATCCACTTGTCATAG 697 101 1567 Antisense
AAATGTGCCCATTCATCATGAGAGC 112 121 1623 Antisense
GACGCATAGTACAGACTCGGGTGTC 174 369 1680 Antisense
CTCGGGTGTCTCATCATTGTCAAGT 220 233 1695 Antisense
AGATCTAAACATCGAAGCCCATCCT 495 65 1786 Antisense
CCTCTACTTCGACAGCCCGTAGAAG 631 267 1808 Antisense
Sequence Source Affymetrix Proprietary Database