[Home] | [Total List]

[180984_at]

Description K09F6.8 /REP_DB=WormBase Gene ID /WP=CE12038 /TR=O16735 /GB=AAB66198.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 20      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 1.8
(-2.9)
A 		2.3
(-2.8)
A 		1.5
(-3)
A 		22.9
(3)
A 		21
B 1.2
(-2.4)
A 		2.1
(3)
A 		1.1
(-3)
A 		1.3
(-1.8)
A 		1
C 20.3
(3)
A 		14.9
(1.3)
A 		1.6
(-3)
A 		13.4
(0.8)
A 		19
avr 7.8
(0.5) 		6.4
(-0.3) 		1.4
(-3) 		12.5
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 21.9
(1.5)
A 		1.3
(-3)
A 		2.4
(-2.7)
A 		1.2
(-3)
A 		1.9
(-2.8)
A 		28.7
(3)
A 		28
B 1.3
(-3)
A 		18.6
(0.3)
A 		26.1
(1.7)
A 		2.5
(-2.7)
A 		1.1
(-3)
A 		32.7
(3)
A 		32
C 1.4
(-3)
A 		1.8
(-2.9)
A 		1.5
(-3)
A 		1.5
(-3)
A 		1.3
(-3)
A 		40
(3)
P 		39
avr 8.2
(-1.7) 		7.2
(-1.9) 		10
(-1.4) 		1.7
(-2.9) 		1.4
(-3) 		33.8
(3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.6
(-2.6)
A 		0.5
(-2.8)
A 		0.4
(-3)
A 		3.4
(3)
A 		3
B 0.4
(1)
A 		0.5
(3)
A 		0.2
(-3)
A 		0.3
(-1)
A 		0
C 6.7
(3)
A 		4.3
(0.6)
A 		0.6
(-3)
A 		2.3
(-1.3)
A 		6
avr 2.6
(3) 		1.8
(0.8) 		0.4
(-3) 		2
(1.4) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 4
(0.3)
A 		0.5
(-2.8)
A 		0.5
(-2.8)
A 		0.3
(-3)
A 		0.6
(-2.7)
A 		7
(3)
A 		7
B 0.5
(-2.9)
A 		6.2
(-0.1)
A 		6.3
(0)
A 		0.7
(-2.8)
A 		0.4
(-3)
A 		12.2
(3)
A 		12
C 0.5
(-2.9)
A 		0.6
(-2.9)
A 		0.4
(-3)
A 		0.3
(-3)
A 		0.4
(-3)
A 		13.4
(3)
P 		13
avr 1.7
(-2.3) 		2.4
(-1.9) 		2.4
(-1.9) 		0.4
(-3) 		0.5
(-2.9) 		10.9
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180984_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4915
Sequence Type Exemplar sequence
Representative Public ID K09F6.8 NCBI
Target Description K09F6.8 /REP_DB=WormBase Gene ID /WP=CE12038 /TR=O16735 /GB=AAB66198.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061827(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061827 NCBI Caenorhabditis elegans K09F6.8 (K09F6.8) mRNA, complete cds. 11/11 None
K09F6.8 ENSEMBL cdna:known chromosome:CEL140:II:2294694:2296104:-1 gene:K09F6.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033213 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2294692-2296103(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09F6.8
Entrez Gene 187235 Entrez gene
SwissProt O16735 EMBL-EBI
WormBase CE12038 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66198 Hypothetical protein K09F6.8 [Caenorhabditis elegans] ref|NP_494228.1| K09F6.8 [Caenorhabditis elegans] 0.0
blast AAC67485 Hypothetical protein F58E1.12 [Caenorhabditis elegans] ref|NP_494045.1| F58E1.12 [Caenorhabditis elegans] 2.0E-97
blast AAB66237 Hypothetical protein R07C3.7 [Caenorhabditis elegans] ref|NP_493850.1| R07C3.7 [Caenorhabditis elegans] 4.0E-45
Sequence
Target Sequence 
>C. ELEGANS:180984_AT
accttcttcaggtagttctgggtgatcggaagaatatcaggatcagaaagctccagctaa
gttgtgcagggattcttcggatcccttctacccttgaccttcaattccgaaacttgaaac
tggggaagaacactgatgaatttgttagatggataaatccactcatcgaaaatttgaaag
aacccttagaatccgtggatattgaggatgatacccatgaaatcctcgaaagttcatttt
ttgaatccgaacgattacttatcataagatatgcccatttaaatttgattcggctagctg
ggaaaagaaacgtttgcatcaaatacgtcaggtgcgttacggaagtcggattgttggatt
ttttgaatagatggcttgagggcagaaggggtgtcggaacatgctggtggttcgcattgg
atgatgaatctcaagcaagaatttttttggaagtcatcaagaaggacgatcgcgctgaag
aagtccaagaatcaagtgtcttgtttccaatgggcaactctacagaggctttcattttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCTTCTTCAGGTAGTTCTGGGTGA 95 87 602 Antisense
AAAGCTCCAGCTAAGTTGTGCAGGG 310 125 648 Antisense
CCTTGACCTTCAATTCCGAAACTTG 401 267 693 Antisense
AAGAACCCTTAGAATCCGTGGATAT 417 135 779 Antisense
GATGATACCCATGAAATCCTCGAAA 40 411 808 Antisense
ACGTCAGGTGCGTTACGGAAGTCGG 283 91 926 Antisense
GAAGGGGTGTCGGAACATGCTGGTG 259 335 986 Antisense
GCTGGTGGTTCGCATTGGATGATGA 220 295 1004 Antisense
ACGATCGCGCTGAAGAAGTCCAAGA 441 93 1067 Antisense
GTGTCTTGTTTCCAATGGGCAACTC 413 485 1097 Antisense
AACTCTACAGAGGCTTTCATTTTCT 329 141 1117 Antisense
Sequence Source Affymetrix Proprietary Database