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[180982_at]

Description F26D2.14 /REP_DB=WormBase Gene ID /WP=CE18644 /TR=Q9XV58 /GB=CAB04184.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 37      4grp_total > 25      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 62.4
(-3)
A 		112.8
(3)
A 		97.9
(1.2)
A 		81.9
(-0.7)
A 		50
B 78.8
(0.7)
A 		74.2
(0.2)
A 		49
(-3)
A 		96.8
(3)
A 		48
C 52.9
(-3)
A 		73.3
(-1.2)
A 		94.3
(0.7)
M 		119.8
(3)
A 		67
avr 64.7
(-3) 		86.8
(0.8) 		80.4
(-0.3) 		99.5
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 112.6
(3)
A 		54.1
(-1.4)
A 		46.3
(-2)
A 		33.6
(-3)
A 		35.5
(-2.9)
A 		58
(-1.1)
A 		79
B 58.7
(1.7)
A 		66.9
(3)
A 		52.6
(0.8)
A 		44.7
(-0.5)
A 		28.5
(-3)
A 		54.1
(1)
A 		38
C 76.6
(3)
M 		48.6
(0.6)
A 		16.9
(-2.1)
A 		29.1
(-1.1)
A 		6.4
(-3)
A 		67.1
(2.2)
A 		70
avr 82.6
(3) 		56.5
(0.4) 		38.6
(-1.5) 		35.8
(-1.8) 		23.5
(-3) 		59.7
(0.7) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 22.7
(1.7)
A 		24.5
(2.5)
A 		25.6
(3)
A 		12
(-3)
A 		14
B 25.1
(3)
A 		18.3
(0)
A 		11.3
(-3)
A 		20.6
(1)
A 		14
C 17.5
(-3)
A 		21.1
(-1.6)
A 		32.9
(3)
M 		20.2
(-1.9)
A 		15
avr 21.8
(1.4) 		21.3
(0.9) 		23.3
(3) 		17.6
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 20.7
(3)
A 		19.2
(2.3)
A 		10.1
(-2.2)
A 		8.5
(-3)
A 		10.7
(-1.9)
A 		14.1
(-0.2)
A 		12
B 20.4
(1.9)
A 		22.3
(3)
A 		12.8
(-2.3)
A 		11.8
(-2.9)
A 		11.6
(-3)
A 		20.2
(1.8)
A 		11
C 28.4
(3)
M 		14.8
(-0.1)
A 		4.3
(-2.5)
A 		5.8
(-2.2)
A 		2.1
(-3)
A 		22.5
(1.7)
A 		26
avr 23.2
(3) 		18.8
(1.3) 		9.1
(-2.6) 		8.7
(-2.8) 		8.1
(-3) 		18.9
(1.3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180982_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12639
Sequence Type Exemplar sequence
Representative Public ID F26D2.14 NCBI
Target Description F26D2.14 /REP_DB=WormBase Gene ID /WP=CE18644 /TR=Q9XV58 /GB=CAB04184.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074755(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074755 NCBI Caenorhabditis elegans F26D2.14 (F26D2.14) mRNA, complete cds. 11/11 None
F26D2.14 ENSEMBL cdna:known chromosome:CEL140:V:16438438:16439319:1 gene:F26D2.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16438437-16439319(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26D2.14
Entrez Gene 184968 Entrez gene
SwissProt Q9XV58 EMBL-EBI
WormBase CE36136 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04184 Hypothetical protein F26D2.14 [Caenorhabditis elegans] ref|NP_507156.2| F26D2.14 [Caenorhabditis elegans] 1.0E-136
blast CAB04129 Hypothetical protein F16H6.3 [Caenorhabditis elegans] ref|NP_507558.1| F16H6.3 [Caenorhabditis elegans] 2.0E-76
blast CAB04183 Hypothetical protein F26D2.13 [Caenorhabditis elegans] ref|NP_507155.1| F26D2.13 [Caenorhabditis elegans] 2.0E-75
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.0E-11
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.7E-12
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.9E-10
Sequence
Target Sequence 
>C. ELEGANS:180982_AT
gatcagtgaaatccgcacctacaggtgctggagcgaattaccaaatccagtaccccctta
ttcggctcatccggatgtcatcagagatgctgcattagcatgcccgaagacttgtgcact
ttgctgtatgactagtgcctataactgccgaaatgctgagtgtgagtcacaaccaaattt
ctgtacatacaccaactttcttacagttccccggctcaactgtgccaccatcgttcctgc
tcagtgtagagatcaacgctggcgaacaataattgcacaagattgcccatcggcttgcgg
attctgtaatcttggaggatgtgtagacgcagtggctgactgtgcaaatgacccctcaat
ctgtaactcgattggaatgcaggtcttcgtgaaccagaactgccaacggacatgctccag
gtgtccatcttccaccagtgctcgaatttcttcctcgacaacttctatcacttccacttg
tagctcgtacaacccagattccagttcttcgtgtgctgcgtgggcggccaatggcttttg
cactaacacccactatacgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCAGTGAAATCCGCACCTACAGG 1 421 216 Antisense
TATTCGGCTCATCCGGATGTCATCA 216 663 274 Antisense
GACTAGTGCCTATAACTGCCGAAAT 598 369 345 Antisense
AGTGGCTGACTGTGCAAATGACCCC 255 59 546 Antisense
CAAATGACCCCTCAATCTGTAACTC 158 193 560 Antisense
AGGTCTTCGTGAACCAGAACTGCCA 47 59 596 Antisense
ATCTTCCACCAGTGCTCGAATTTCT 423 31 642 Antisense
TCGAATTTCTTCCTCGACAACTTCT 610 599 657 Antisense
CAGATTCCAGTTCTTCGTGTGCTGC 287 207 710 Antisense
TGGGCGGCCAATGGCTTTTGCACTA 433 551 736 Antisense
TTTTGCACTAACACCCACTATACGG 141 677 751 Antisense
Sequence Source Affymetrix Proprietary Database