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[180981_at]

Description Y51H1A.1 /REP_DB=WormBase Gene ID /WP=CE20282 /TR=Q9XTD7 /GB=CAA21673.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 29      4grp_highest_8_8 > 56      4grp_high_8_8 > 35      6grp_highest_nonorm > 83      6grp_total > 28      4grp_total > 45      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 299
1 2 3 4 range
A 591
(1.4)
P 		653.2
(3)
P 		511.6
(-0.7)
P 		425.6
(-3)
P 		228
B 570
(3)
P 		457.7
(-3)
P 		471
(-2.3)
P 		537.3
(1.3)
P 		112
C 563.6
(3)
P 		561.4
(2.9)
P 		354.1
(-3)
P 		495.9
(1.1)
P 		210
avr 574.9
(3) 		557.4
(2.2) 		445.6
(-3) 		486.3
(-1.1) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 219
1 2 3 4 5 6 range
A 547.5
(3)
P 		386.8
(-1.5)
P 		363.7
(-2.2)
P 		334
(-3)
P 		412.3
(-0.8)
P 		517.8
(2.2)
P 		214
B 503.4
(1.5)
P 		495.1
(1.1)
P 		426.7
(-2.3)
P 		411.7
(-3)
P 		534.9
(3)
P 		489.6
(0.8)
P 		123
C 553.2
(3)
P 		478.1
(0.9)
P 		373.6
(-2.1)
P 		395.5
(-1.5)
P 		465.4
(0.5)
P 		342.4
(-3)
P 		211
avr 534.7
(3) 		453.3
(-0.2) 		388
(-2.7) 		380.4
(-3) 		470.9
(0.5) 		449.9
(-0.3) 		154
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 215.2
(3)
P 		141.8
(0.1)
P 		133.8
(-0.2)
P 		62.3
(-3)
P 		153
B 181.8
(3)
P 		113
(-2.7)
P 		109.1
(-3)
P 		114.5
(-2.6)
P 		73
C 186.6
(3)
P 		161.4
(1.5)
P 		123.4
(-0.7)
P 		83.6
(-3)
P 		103
avr 194.5
(3) 		138.7
(-0.1) 		122.1
(-1) 		86.8
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 100.9
(-0.8)
P 		137.6
(3)
P 		79.2
(-3)
P 		84.7
(-2.4)
P 		124.4
(1.6)
P 		126.1
(1.8)
P 		58
B 175.2
(0.8)
P 		164.8
(0.2)
P 		103.6
(-3)
P 		109
(-2.7)
P 		217.3
(3)
P 		182.6
(1.2)
P 		114
C 205
(3)
P 		145.9
(0.2)
P 		95.1
(-2.3)
P 		79.5
(-3)
P 		150.6
(0.4)
P 		114.6
(-1.3)
P 		126
avr 160.4
(2.7) 		149.4
(1.8) 		92.6
(-2.9) 		91.1
(-3) 		164.1
(3) 		141.1
(1.1) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180981_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2833
Sequence Type Exemplar sequence
Representative Public ID Y51H1A.1 NCBI
Target Description Y51H1A.1 /REP_DB=WormBase Gene ID /WP=CE20282 /TR=Q9XTD7 /GB=CAA21673.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182247(11), NM_064504(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182247 NCBI Caenorhabditis elegans Y51H1A.1b (Y51H1A.1) mRNA, complete cds. 11/11 None
NM_064504 NCBI Caenorhabditis elegans Y51H1A.1a (Y51H1A.1) mRNA, complete cds. 11/11 None
Y51H1A.1b ENSEMBL cdna:known chromosome:CEL140:II:13855693:13860904:-1 gene:Y51H1A.1 11/11 None
Y51H1A.1a ENSEMBL cdna:known chromosome:CEL140:II:13855876:13859922:-1 gene:Y51H1A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044413 8/11 Cross Hyb Matching Probes None
GENEFINDER00000044419 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13855872-13859919(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y51H1A.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD57710 Hypothetical protein Y51H1A.1b [Caenorhabditis elegans] emb|CAD57692.1| Hypothetical protein Y51H1A.1b [Caenorhabditis elegans] ref|NP_872047.1| Y51H1A.1b [Caenorhabditis elegans] 0.0
blast CAA21673 Hypothetical protein Y51H1A.1a [Caenorhabditis elegans] emb|CAB04064.1| Hypothetical protein Y51H1A.1a [Caenorhabditis elegans] ref|NP_496905.1| Y51H1A.1a [Caenorhabditis elegans] 0.0
blast CAE73265 Hypothetical protein CBG20681 [Caenorhabditis briggsae] 1.0E-179
Sequence
Target Sequence 
>C. ELEGANS:180981_AT
ggcccgcgtcgtaatggactgggattggcgggaacgggccgtctcggaccgaggacgtgc
ctggtatgaggcgaatcaggagaaggcgctgatcaatatcaagacaacaaatagccgact
gtatgcacatgctccggctctcgaagagactcggaagcttcgcgagaagcttcagctcgt
ctcaatgtacctattcacgtgccgggaatctgtgtcagaggactttcggcgtcgattgtg
gcctaaagagtatttgagatcggaaattgacgtgtattcctttgctgacttgattgatgt
gaagagtggagcactgcagagacgattgaatagtctcttgaagcactcgatcaatcatgt
catgacatgcacattgtgcaagcagaaaggcttctgttgtgagctgtgcactgtcaatga
ggtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCCCGCGTCGTAATGGACTGGGAT 11 543 582 Antisense
GACCGAGGACGTGCCTGGTATGAGG 50 383 628 Antisense
ATAGCCGACTGTATGCACATGCTCC 74 23 692 Antisense
GCTCCGGCTCTCGAAGAGACTCGGA 484 297 712 Antisense
TTCAGCTCGTCTCAATGTACCTATT 460 685 752 Antisense
ACCTATTCACGTGCCGGGAATCTGT 347 87 770 Antisense
AGGACTTTCGGCGTCGATTGTGGCC 529 53 800 Antisense
ATTGACGTGTATTCCTTTGCTGACT 475 5 847 Antisense
GAATAGTCTCTTGAAGCACTCGATC 235 327 909 Antisense
AAGGCTTCTGTTGTGAGCTGTGCAC 394 161 968 Antisense
GAGCTGTGCACTGTCAATGAGGTCA 179 387 982 Antisense
Sequence Source Affymetrix Proprietary Database