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[180980_at]

Description F52B11.1 /REP_DB=WormBase Gene ID /WP=CE18721 /TR=Q9XUE7 /GB=CAB05197.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 54      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 90      6grp_total > 44      4grp_total > 14      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 178.2
(1.7)
P 		123.8
(-0.7)
P 		73.6
(-3)
P 		206.3
(3)
P 		133
B 178.7
(0.3)
P 		78.4
(-3)
P 		79.4
(-3)
P 		260.6
(3)
P 		182
C 185.2
(3)
P 		103.2
(-2.5)
P 		95.5
(-3)
P 		143.4
(0.2)
P 		90
avr 180.7
(1.9) 		101.8
(-2.1) 		82.8
(-3) 		203.4
(3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 192.2
(-1.2)
P 		171.5
(-1.9)
P 		321
(3)
P 		138.6
(-2.9)
P 		136.4
(-3)
P 		175.3
(-1.7)
P 		185
B 159.4
(0)
P 		123.5
(-3)
P 		195.3
(3)
P 		139.6
(-1.7)
P 		141.9
(-1.5)
P 		159
(-0)
P 		72
C 167
(0.6)
P 		208
(3)
P 		132
(-1.5)
P 		148.1
(-0.5)
P 		105.7
(-3)
P 		178.7
(1.3)
P 		102
avr 172.9
(0.1) 		167.7
(-0.3) 		216.1
(3) 		142.1
(-2) 		128
(-3) 		171
(-0.1) 		88
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 64.9
(3)
P 		26.9
(-2)
P 		19.2
(-3)
P 		30.2
(-1.6)
P 		46
B 57
(3)
P 		19.4
(-2.8)
P 		18.4
(-3)
P 		55.5
(2.8)
P 		39
C 61.3
(3)
P 		29.7
(-2.1)
P 		33.3
(-1.5)
P 		24.2
(-3)
P 		37
avr 61.1
(3) 		25.3
(-2.7) 		23.6
(-3) 		36.6
(-0.9) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 35.4
(-3)
P 		61
(1.5)
P 		69.9
(3)
P 		35.2
(-3)
P 		41.2
(-2)
P 		42.7
(-1.7)
P 		35
B 55.4
(2)
P 		41.1
(-1.9)
P 		47.4
(-0.2)
P 		37
(-3)
P 		57.6
(2.5)
P 		59.3
(3)
P 		22
C 61.9
(2.7)
P 		63.5
(3)
P 		33.6
(-2.3)
P 		29.8
(-3)
P 		34.2
(-2.2)
P 		59.8
(2.3)
P 		34
avr 50.9
(1.8) 		55.2
(3) 		50.3
(1.6) 		34
(-3) 		44.3
(-0.1) 		53.9
(2.6) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180980_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8385
Sequence Type Exemplar sequence
Representative Public ID F52B11.1 NCBI
Target Description F52B11.1 /REP_DB=WormBase Gene ID /WP=CE18721 /TR=Q9XUE7 /GB=CAB05197.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028044, NM_001028043
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000035588 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14078276:14082993:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001028043 8/11 Cross Hyb Matching Probes None
NM_001028044 8/11 Cross Hyb Matching Probes None
SNAP00000035579 8/11 Cross Hyb Matching Probes None
F52B11.1a.3 8/11 Cross Hyb Matching Probes None
F52B11.1b 8/11 Cross Hyb Matching Probes None
F52B11.1a.2 8/11 Cross Hyb Matching Probes A 
F52B11.1a.1 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14077424-14083147(+) 93.77 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD89737 Hypothetical protein F52B11.1b [Caenorhabditis elegans] ref|NP_001023215.1| F52B11.1b [Caenorhabditis elegans] 1.0E-120
blast CAB05197 Hypothetical protein F52B11.1a [Caenorhabditis elegans] ref|NP_001023214.1| F52B11.1a [Caenorhabditis elegans] 1.0E-120
blast CAE71769 Hypothetical protein CBG18764 [Caenorhabditis briggsae] 1.0E-110
Sequence
Target Sequence 
>C. ELEGANS:180980_AT
acgaattctttctgtaaacggctgaaatctctgtgcccagaacatcgaaaactgggcgat
gaacagcatttgaaagtgtgcggttatccgaagaaatgggaagatggaatgattgagacg
gcgaagacagtttcagaattgattgaaatggaagacccattcggtgaggaaggctgtcga
acgaagaaggacgcgtgtcacaagcatcacaaatggataccatcgttgagaggaactatt
gagctggaacaagcttgtctgtttcagaaaatgtatgagctgtgccacgagatgcacaaa
ttgaatgctcacgccgaatggacaacgaatgctctgtcgattatgatgcacaaacagccg
agtacggaaaaatgctcattttttctgcgaaattttgcgattttcgcgccaaaattacgg
tggccggtctcgacacgacaattttttgttgggtgcaaaaatgtgtgcgcctttgaagat
tactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGAATTCTTTCTGTAAACGGCTGA 410 69 973 Antisense
AAACGGCTGAAATCTCTGTGCCCAG 447 127 988 Antisense
GACCCATTCGGTGAGGAAGGCTGTC 322 381 1126 Antisense
GAAGGACGCGTGTCACAAGCATCAC 154 335 1158 Antisense
GCTGGAACAAGCTTGTCTGTTTCAG 241 295 1215 Antisense
TGTATGAGCTGTGCCACGAGATGCA 432 559 1244 Antisense
GAATGCTCACGCCGAATGGACAACG 76 331 1275 Antisense
ACGAATGCTCTGTCGATTATGATGC 706 91 1297 Antisense
TGATGCACAAACAGCCGAGTACGGA 356 565 1316 Antisense
TTCGCGCCAAAATTACGGTGGCCGG 453 697 1375 Antisense
ATGTGTGCGCCTTTGAAGATTACTT 685 49 1433 Antisense
Sequence Source Affymetrix Proprietary Database