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[180978_at]

Description M03F4.6 /REP_DB=WormBase Gene ID /WP=CE12366 /TR=Q23016 /GB=AAB04577.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 70      6grp_highest_nonorm > 62      6grp_total > 61      4grp_total > 49      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 858
1 2 3 4 range
A 202.2
(-3)
A 		995.8
(3)
P 		964.6
(2.8)
P 		198.4
(-3)
A 		797
B 164.8
(-2.8)
A 		895.7
(3)
P 		855.6
(2.7)
P 		137.6
(-3)
A 		758
C 203.2
(-3)
A 		855
(2.7)
P 		886.6
(3)
P 		198.1
(-3)
A 		689
avr 190.1
(-2.9) 		915.5
(3) 		902.3
(2.9) 		178
(-3) 		738

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 432
1 2 3 4 5 6 range
A 526.1
(0.2)
P 		557.4
(0.7)
P 		550.9
(0.6)
P 		685.9
(3)
P 		612.3
(1.7)
P 		345.6
(-3)
P 		340
B 512
(0.1)
P 		466.5
(-0.5)
P 		551.1
(0.7)
P 		717.2
(3)
P 		633
(1.8)
P 		286.4
(-3)
P 		431
C 537.5
(0.3)
P 		416.2
(-1.5)
P 		718.5
(3)
P 		675.2
(2.4)
P 		606.2
(1.3)
P 		313.6
(-3)
P 		405
avr 525.2
(0.3) 		480
(-0.4) 		606.8
(1.6) 		692.8
(3) 		617.2
(1.8) 		315.2
(-3) 		378
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 280
1 2 3 4 range
A 73.6
(-1.8)
A 		216.2
(2)
P 		252.2
(3)
P 		29
(-3)
A 		223
B 52.6
(-2.3)
A 		221.2
(3)
P 		198.3
(2.3)
P 		29.3
(-3)
A 		192
C 67.3
(-2.3)
A 		245.8
(1.6)
P 		309
(3)
P 		33.4
(-3)
A 		276
avr 64.5
(-2.1) 		227.7
(2.3) 		253.2
(3) 		30.6
(-3) 		223

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 97
(-2.3)
P 		198.2
(3)
P 		120
(-1.1)
P 		174
(1.7)
P 		184.8
(2.3)
P 		84.2
(-3)
P 		114
B 178.1
(-0.2)
P 		155.3
(-1.1)
P 		133.8
(-1.9)
P 		190
(0.3)
P 		257.2
(3)
P 		106.8
(-3)
P 		150
C 199.2
(3)
P 		127
(-1.6)
P 		182.9
(2)
P 		135.8
(-1)
P 		196.2
(2.8)
P 		105
(-3)
P 		94
avr 158.1
(0.1) 		160.2
(0.2) 		145.6
(-0.5) 		166.6
(0.6) 		212.7
(3) 		98.7
(-3) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180978_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16277
Sequence Type Exemplar sequence
Representative Public ID M03F4.6 NCBI
Target Description M03F4.6 /REP_DB=WormBase Gene ID /WP=CE12366 /TR=Q23016 /GB=AAB04577.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076442(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076442 NCBI Caenorhabditis elegans M03F4.6 (M03F4.6) mRNA, complete cds. 9/11 A 
GENEFINDER00000026199 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4964473:4969288:-1 9/11 None
SNAP00000026191 ENSEMBL cdna:SNAP chromosome:CEL140:X:4965789:4969288:-1 9/11 None
M03F4.6 ENSEMBL cdna:known chromosome:CEL140:X:4964391:4969326:-1 gene:M03F4.6 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4966566-4967197(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M03F4.6
Entrez Gene 180768 Entrez gene
SwissProt Q23015 EMBL-EBI
WormBase CE28621 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04576 Hypothetical protein M03F4.6 [Caenorhabditis elegans] ref|NP_508843.1| M03F4.6 [Caenorhabditis elegans] 0.0
blast CAE68671 Hypothetical protein CBG14575 [Caenorhabditis briggsae] 0.0
blast T25841 hypothetical protein M03F4.6 - Caenorhabditis elegans 5.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.9E-9
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.8E-8
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 7.4E-8
Sequence
Target Sequence 
>C. ELEGANS:180978_AT
acgctacttcatctattcatttacagatgcgtcgacccatttaacgcctgcattgctgga
acatgtttgtgtgctcctggaacaacgagagatactgaacggggattctgtcacgctaca
tgtcccgatgggatgcatcctcgtcaaacatgccgtcggctgttcatcaacgacattgat
atgcttgagaacgccgccaacaccgatagctgcccattaggctatcgatgcgtcacgtat
ggcagcccatatgtgggtcattgttgtcggctacggtgtccatatggagagccggatttg
agtcagtcgtgtgacgcgggagcatctccagactcaaaatgcagaccactcactcacttc
tgcttcactgtcagtgagccaggatggaaatcgtcgctgtgttgtcccagaccatgtcgt
gatccgacacccctctatgtgaacggacagtgcctttcaattgctcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGCTACTTCATCTATTCATTTACA 605 91 16 Antisense
AGATGCGTCGACCCATTTAACGCCT 511 65 40 Antisense
GAACATGTTTGTGTGCTCCTGGAAC 614 351 74 Antisense
GGGATTCTGTCACGCTACATGTCCC 113 497 117 Antisense
TGCCGTCGGCTGTTCATCAACGACA 143 585 166 Antisense
GCCCATTAGGCTATCGATGCGTCAC 646 283 227 Antisense
TCATTGTTGTCGGCTACGGTGTCCA 229 617 273 Antisense
GACTCAAAATGCAGACCACTCACTC 502 373 346 Antisense
TGGAAATCGTCGCTGTGTTGTCCCA 618 547 400 Antisense
TCCGACACCCCTCTATGTGAACGGA 618 593 438 Antisense
GGACAGTGCCTTTCAATTGCTCATA 517 525 460 Antisense
Sequence Source Affymetrix Proprietary Database