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[180977_at]

Description E02H9.2 /REP_DB=WormBase Gene ID /WP=CE26882 /TR=Q9TZ96 /GB=AAC68768.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 47      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 28.8
(3)
A 		6.8
(-2.1)
A 		2.7
(-3)
A 		7
(-2)
A 		26
B 9.1
(3)
A 		2
(-2.4)
A 		1.6
(-2.7)
A 		1.2
(-3)
A 		8
C 24
(3)
A 		5.3
(-2.6)
A 		5.2
(-2.6)
A 		3.9
(-3)
A 		20
avr 20.6
(3) 		4.7
(-2.5) 		3.2
(-3) 		4
(-2.7) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 7.6
(-0.5)
A 		7.6
(-0.5)
A 		13.3
(3)
A 		3.5
(-3)
A 		3.5
(-3)
A 		4.9
(-2.1)
A 		10
B 2.8
(-2.8)
A 		2.7
(-3)
A 		4.5
(0.5)
A 		4.8
(1.1)
A 		5.4
(2.2)
A 		5.8
(3)
A 		3
C 4.1
(-1.9)
A 		3.5
(-3)
A 		5.5
(0.5)
A 		6.9
(3)
A 		4.7
(-0.9)
A 		6.7
(2.6)
A 		3
avr 4.8
(-2.5) 		4.6
(-2.8) 		7.8
(3) 		5.1
(-1.9) 		4.5
(-3) 		5.8
(-0.6) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10.5
(3)
A 		1.5
(-2.5)
A 		0.7
(-3)
A 		1
(-2.8)
A 		10
B 2.9
(3)
A 		0.5
(-2.5)
A 		0.4
(-2.8)
A 		0.3
(-3)
A 		3
C 7.9
(3)
A 		1.5
(-2.3)
A 		1.8
(-2.1)
A 		0.7
(-3)
A 		7
avr 7.1
(3) 		1.2
(-2.5) 		1
(-2.7) 		0.7
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.4
(-1.5)
A 		2.7
(2.4)
A 		2.9
(3)
A 		0.9
(-3)
A 		1
(-2.7)
A 		1.2
(-2.1)
A 		2
B 1
(-2.5)
A 		0.9
(-3)
A 		1.1
(-2.1)
A 		1.3
(-1.2)
A 		2.2
(3)
A 		2.2
(3)
A 		1
C 1.5
(-1)
A 		1.1
(-3)
A 		1.4
(-1.5)
A 		1.4
(-1.5)
A 		1.5
(-1)
A 		2.3
(3)
A 		1
avr 1.3
(-2.1) 		1.6
(0.4) 		1.8
(2.1) 		1.2
(-3) 		1.6
(0.4) 		1.9
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180977_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7929
Sequence Type Exemplar sequence
Representative Public ID E02H9.2 NCBI
Target Description E02H9.2 /REP_DB=WormBase Gene ID /WP=CE26882 /TR=Q9TZ96 /GB=AAC68768.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065161
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065161 NCBI Caenorhabditis elegans E02H9.2 (E02H9.2) mRNA, complete cds. None
GENEFINDER00000038960 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2456759:2466788:1 None
SNAP00000038956 ENSEMBL cdna:SNAP chromosome:CEL140:III:2460588:2469431:1 None
E02H9.2 ENSEMBL cdna:known chromosome:CEL140:III:2465462:2466788:1 gene:E02H9.2 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2465968-2466788(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E02H9.2
Entrez Gene 183999 Entrez gene
SwissProt Q9TZ96 EMBL-EBI
WormBase CE26882 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAU05582 Hypothetical protein E02H9.3b [Caenorhabditis elegans] ref|NP_001021235.1| E02H9.3b [Caenorhabditis elegans] 0.0
blast AAU05581 Hypothetical protein E02H9.3a [Caenorhabditis elegans] ref|NP_001021234.1| E02H9.3a [Caenorhabditis elegans] 0.0
blast T33601 hypothetical protein E02H9.3 - Caenorhabditis elegans 0.0
blast AAC68768 Hypothetical protein E02H9.2 [Caenorhabditis elegans] ref|NP_497562.1| E02H9.2 [Caenorhabditis elegans] 1.0E-114
blast T32521 hypothetical protein C49A9.4 - Caenorhabditis elegans 3.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 3.2E-14
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 1.2E-77
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 5.7E-72
Sequence
Target Sequence 
>C. ELEGANS:180977_AT
aagcgtgagtacctttttggcgccaggaaatactcggaaatcttatcaatgttcagaacg
gggcaattagaaaagggtgacatccccttgtgtgctgatgttattgatgaagccaacttt
tatgaagaaccaagaagtaaactatcccgaaagggtatttcaagatacccaactataaaa
tctcaccgttcaaactcaccatccgatggtgcatatgaatatattgatgtgatttatcca
ggcgatcaagaaaaccgtcttttaggctacgagattaatcaatggtggaagaatgtaaca
tatggagaacctggatccgcctgcgaccccgatcgccacaacaacgatggtctctgctca
ttgggtgctccgacaaccacgactacaactactacacccaaaccgcctccagctactccg
aagcctgatcagaaggatccaaaggacgatgccaaatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCGTGAGTACCTTTTTGGCGCCA 609 147 28 Antisense
GAGTACCTTTTTGGCGCCAGGAAAT 471 397 34 Antisense
GGCGCCAGGAAATACTCGGAAATCT 407 539 46 Antisense
GGAAATCTTATCAATGTTCAGAACG 478 527 63 Antisense
CAATGTTCAGAACGGGGCAATTAGA 103 181 74 Antisense
GGCGATCAAGAAAACCGTCTTTTAG 545 537 268 Antisense
CCGTCTTTTAGGCTACGAGATTAAT 355 261 282 Antisense
CATATGGAGAACCTGGATCCGCCTG 66 215 326 Antisense
CAGCTACTCCGAAGCCTGATCAGAA 605 203 437 Antisense
GAAGCCTGATCAGAAGGATCCAAAG 613 343 447 Antisense
GGATCCAAAGGACGATGCCAAATCT 209 513 462 Antisense
Sequence Source Affymetrix Proprietary Database