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[180976_s_at]

Description H02I12.1 /REP_DB=WormBase Gene ID /WP=CE16158 /TR=O45599 /GB=CAB07215.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 40      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 106.8
(-3)
A 		160
(1.2)
P 		178.5
(2.7)
P 		182.7
(3)
A 		76
B 123.6
(-2.2)
P 		113.1
(-2.8)
A 		226.6
(3)
P 		108.5
(-3)
A 		118
C 120.4
(-3)
A 		170.3
(1.5)
A 		186.8
(3)
P 		173.4
(1.8)
M 		66
avr 116.9
(-3) 		147.8
(-0.7) 		197.3
(3) 		154.9
(-0.2) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5497
1 2 3 4 5 6 range
A 20.8
(-3)
A 		165.9
(-2.8)
P 		130.8
(-2.9)
P 		455.2
(-2.5)
P 		2602
(-0.2)
P 		5517.9
(3)
P 		5497
B 45.8
(-3)
A 		88.4
(-2.9)
P 		194.1
(-2.8)
P 		568
(-2.3)
P 		1909.5
(-0.5)
P 		4453.4
(3)
P 		4408
C 46.2
(-3)
A 		114.4
(-2.9)
A 		173.1
(-2.8)
P 		465.6
(-2.5)
P 		2573.5
(0)
P 		5075.5
(3)
P 		5029
avr 37.6
(-3) 		122.9
(-2.9) 		166
(-2.8) 		496.3
(-2.4) 		2361.7
(-0.2) 		5015.6
(3) 		4978
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 38.9
(0.7)
A 		34.7
(-0.6)
P 		46.7
(3)
P 		26.7
(-3)
A 		20
B 39.4
(0.3)
P 		27.9
(-2)
A 		52.5
(3)
P 		23.1
(-3)
A 		29
C 39.9
(-1.2)
A 		49
(0.3)
A 		65.1
(3)
P 		29.2
(-3)
M 		36
avr 39.4
(-0.2) 		37.2
(-0.7) 		54.8
(3) 		26.3
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1695
1 2 3 4 5 6 range
A 3.8
(-3)
A 		59
(-2.8)
P 		28.5
(-2.9)
P 		115.5
(-2.5)
P 		785.2
(0.5)
P 		1343.4
(3)
P 		1340
B 15.9
(-3)
A 		29.4
(-3)
P 		47.1
(-2.9)
P 		150.4
(-2.5)
P 		775.8
(-0.2)
P 		1660.7
(3)
P 		1645
C 17.1
(-3)
A 		34.9
(-2.9)
A 		44.1
(-2.9)
P 		93.6
(-2.7)
P 		832.7
(-0.1)
P 		1699.1
(3)
P 		1682
avr 12.3
(-3) 		41.1
(-2.9) 		39.9
(-2.9) 		119.8
(-2.6) 		797.9
(0) 		1567.7
(3) 		1555
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180976_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8775
Sequence Type Exemplar sequence
Representative Public ID H02I12.1 NCBI
Target Description H02I12.1 /REP_DB=WormBase Gene ID /WP=CE16158 /TR=O45599 /GB=CAB07215.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069744(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069744 NCBI Caenorhabditis elegans H02I12.1 (H02I12.1) mRNA, complete cds. 11/11 None
SNAP00000036319 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11372965:11377340:1 11/11 None
GENEFINDER00000036333 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11372965:11377340:1 11/11 None
H02I12.1 ENSEMBL cdna:known chromosome:CEL140:IV:11372962:11377568:1 gene:H02I12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11372881-11377346(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H02I12.1
Entrez Gene 178061 Entrez gene
SwissProt O45599 EMBL-EBI
WormBase CE37527 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6030 chitin metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8061 chitin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07215 Hypothetical protein H02I12.1 [Caenorhabditis elegans] ref|NP_502145.2| H02I12.1 [Caenorhabditis elegans] 0.0
blast CAE63911 Hypothetical protein CBG08482 [Caenorhabditis briggsae] 0.0
blast CAE58519 Hypothetical protein CBG01670 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 3.5E-5
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 2.9E-14
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 3.9E-14
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 4.0E-10
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 7.2E-20
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 4.4E-15
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.8E-10
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 3.0E-12
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 4.7E-16
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.2E-21
Sequence
Target Sequence 
>C. ELEGANS:180976_S_AT
gctgtcttttctattggtgtctgcagcagcaaatatctcagatgctcgtacggtgcttca
aaacttcaacaatgttccgaagatcgtgttttttcaaatgacaagttggagtgtatcgtt
agagaatctgtatccgcgtgtactgttccgaaaaatccgtccatcaagaagtactacacc
agtaatgatcagtccgctttttgtgatggaaaggaagatggcctttacagaaacgaaaga
gattgttcggcaattcttcagtgcttcggaggagaactgttcgaacatccatcatgtcaa
tccagccttgcattcaatcaattgaccggcaaatgcgactacccacaaaaagtcagtgga
tgcgagaaccatggtcaaaccaatggagaatgctccgaacatggatctttcatcgctgat
gccaataactgcgaagttttctatcgatgcgtgtggggacgaaaggttgtgatgacgtgc
ccatcgggaaccgtgttcaatccattgttgtccgtttgcgattggccaagcgcagtacca
tcttgttctggccaagcgtctgacagcaactcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGTCTTTTCTATTGGTGTCTGCA 681 295 3394 Antisense
TCAGATGCTCGTACGGTGCTTCAAA 21 623 3431 Antisense
GAATCTGTATCCGCGTGTACTGTTC 499 327 3517 Antisense
CTGTTCCGAAAAATCCGTCCATCAA 367 239 3536 Antisense
AGTAATGATCAGTCCGCTTTTTGTG 266 61 3574 Antisense
GAACATCCATCATGTCAATCCAGCC 255 351 3676 Antisense
ACATGGATCTTTCATCGCTGATGCC 389 107 3792 Antisense
GGGAACCGTGTTCAATCCATTGTTG 398 493 3879 Antisense
ATTGTTGTCCGTTTGCGATTGGCCA 302 5 3897 Antisense
AAGCGCAGTACCATCTTGTTCTGGC 35 149 3921 Antisense
GCCAAGCGTCTGACAGCAACTCTTC 399 277 3944 Antisense
Sequence Source Affymetrix Proprietary Database