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[180975_at]

Description Y79H2A.3 /REP_DB=WormBase Gene ID /WP=CE23092 /TR=Q9U1R8 /GB=CAB54509.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 38      4grp_high_8_8 > 29      6grp_highest_nonorm > 81      6grp_total > 37      4grp_total > 34      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 248
(-3)
P 		357.7
(3)
P 		280.8
(-1.2)
P 		310.7
(0.4)
P 		110
B 243.2
(-2.2)
P 		306.1
(3)
P 		234.2
(-3)
P 		276.4
(0.5)
P 		72
C 216.7
(-3)
P 		288.4
(0.5)
A 		243.2
(-1.7)
P 		339.5
(3)
P 		123
avr 236
(-3) 		317.4
(3) 		252.7
(-1.8) 		308.9
(2.4) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 269
1 2 3 4 5 6 range
A 363.7
(1.5)
P 		355.1
(1.3)
P 		199.5
(-3)
P 		276.2
(-0.9)
P 		239.9
(-1.9)
P 		417.2
(3)
P 		218
B 373.9
(3)
P 		250.8
(-1.3)
P 		271.6
(-0.5)
P 		237.4
(-1.7)
P 		200.3
(-3)
P 		284
(-0.1)
P 		174
C 468.7
(3)
P 		255.3
(-2.5)
P 		275.2
(-2)
P 		236.2
(-3)
P 		264.4
(-2.3)
P 		342.2
(-0.3)
P 		233
avr 402.1
(3) 		287.1
(-1.1) 		248.8
(-2.5) 		249.9
(-2.5) 		234.9
(-3) 		347.8
(1.1) 		167
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 90.3
(3)
P 		77.7
(1.3)
P 		73.4
(0.7)
P 		45.5
(-3)
P 		45
B 77.6
(3)
P 		75.6
(2.5)
P 		54.3
(-3)
P 		58.9
(-1.8)
P 		23
C 71.7
(0.2)
P 		82.9
(2.6)
A 		84.7
(3)
P 		57.2
(-3)
P 		28
avr 79.9
(3) 		78.7
(2.7) 		70.8
(0.9) 		53.9
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 67
(-1.3)
P 		126.3
(3)
P 		43.5
(-3)
P 		70.1
(-1.1)
P 		72.4
(-0.9)
P 		101.6
(1.2)
P 		83
B 130.1
(3)
P 		83.5
(-1.2)
P 		66
(-2.7)
P 		62.9
(-3)
P 		81.4
(-1.3)
P 		105.9
(0.8)
P 		67
C 173.7
(3)
P 		77.9
(-1.6)
P 		70
(-1.9)
P 		47.5
(-3)
P 		85.6
(-1.2)
P 		114.6
(0.2)
P 		126
avr 123.6
(3) 		95.9
(0.4) 		59.8
(-3) 		60.2
(-3) 		79.8
(-1.1) 		107.4
(1.5) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180975_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7748
Sequence Type Exemplar sequence
Representative Public ID Y79H2A.3 NCBI
Target Description Y79H2A.3 /REP_DB=WormBase Gene ID /WP=CE23092 /TR=Q9U1R8 /GB=CAB54509.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027784(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027784 NCBI Caenorhabditis elegans Y79H2A.3a (Y79H2A.3) mRNA, complete cds. 11/11 None
SNAP00000018009 ENSEMBL cdna:SNAP chromosome:CEL140:III:12031580:12051941:-1 11/11 None
GENEFINDER00000018015 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12031580:12039713:-1 11/11 None
Y79H2A.3a ENSEMBL cdna:known chromosome:CEL140:III:12031142:12052169:-1 gene:Y79H2A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176638 2 1 NM_001027784 180975_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12031575-12052165(-) 87.98 100.0
Public Domain and Genome References
Ensembl Y79H2A.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54509 Hypothetical protein Y79H2A.3a [Caenorhabditis elegans] ref|NP_001022955.1| Y79H2A.3a [Caenorhabditis elegans] 0.0
blast CAE47474 Hypothetical protein Y79H2A.3b [Caenorhabditis elegans] ref|NP_001022956.1| Y79H2A.3b [Caenorhabditis elegans] 0.0
blast CAE71287 Hypothetical protein CBG18175 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 0.649999976158142
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 1.10000002384186
Sequence
Target Sequence 
>C. ELEGANS:180975_AT
tggctcaaatcccgtcaaacatccaccacaagctccgcaaatagtccgtccaacactgga
atcgtcactcggaatgcctgctccgattgctgtgagcaaggcgattccgcccccgcagcc
gatgatgcctcagcagcagcagcaacagcctcagatgatgtaccaacagcagcaaatgta
tggagcaccggcacaatatcaacaacagccgatgatctaccaacagcaaatgcagcagca
gcctatgcagtatcagcaacaaatgtaccaacaacaaccaccacagccccagtatgccca
acaatacggaattcagcagccaatatatcaacaagctcccccgcagcagcagcagcagcc
tgtctatcagcagccaacataccagcagccgccggttcaacaattccaaccacaacaaca
acaacagtactatcagcctcaacaacaagcccttccacaagttcagccacaatttcaaac
tcctgcttcgtcgtatggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCTCAAATCCCGTCAAACATCCA 495 545 5862 Antisense
CCACAAGCTCCGCAAATAGTCCGTC 473 273 5887 Antisense
GTCCAACACTGGAATCGTCACTCGG 338 477 5909 Antisense
CACTCGGAATGCCTGCTCCGATTGC 636 195 5927 Antisense
GCTGTGAGCAAGGCGATTCCGCCCC 200 295 5950 Antisense
GTATGGAGCACCGGCACAATATCAA 446 455 6039 Antisense
AACAGCCGATGATCTACCAACAGCA 476 135 6065 Antisense
AGCAGCAGCCTATGCAGTATCAGCA 664 75 6095 Antisense
ACTATCAGCCTCAACAACAAGCCCT 426 101 6290 Antisense
CTTCCACAAGTTCAGCCACAATTTC 259 217 6313 Antisense
CAAACTCCTGCTTCGTCGTATGGAG 294 191 6337 Antisense
Sequence Source Affymetrix Proprietary Database