[Home] | [Total List]

[180974_at]

Description C09H10.5 /REP_DB=WormBase Gene ID /WP=CE02134 /TR=Q17882 /GB=CAA90437.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 30      4grp_high_8_8 > 03      6grp_total > 44      4grp_total > 04      6grp_high1_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 58.6
(-1.4)
P 		39.3
(-3)
A 		49.9
(-2.1)
A 		109.9
(3)
P 		71
B 90.6
(0.6)
P 		43.2
(-3)
P 		58.7
(-1.8)
P 		122.5
(3)
P 		79
C 43.2
(-2.2)
A 		39.4
(-2.5)
P 		31.6
(-3)
P 		121.6
(3)
P 		90
avr 64.1
(-1.2) 		40.6
(-3) 		46.7
(-2.5) 		118
(3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 65.3
(3)
P 		36.7
(-3)
A 		56.3
(1.1)
P 		50
(-0.2)
P 		44.5
(-1.4)
P 		65.3
(3)
M 		29
B 65.9
(2.7)
P 		32.1
(-2.2)
A 		41.7
(-0.8)
A 		26.3
(-3)
A 		53.8
(0.9)
P 		68.1
(3)
P 		42
C 45.4
(-0.9)
M 		56.6
(-0.2)
P 		111.2
(3)
P 		29.6
(-1.8)
A 		9.6
(-3)
A 		51.1
(-0.5)
P 		102
avr 58.9
(1.1) 		41.8
(-1.9) 		69.7
(3) 		35.3
(-3) 		36
(-2.9) 		61.5
(1.6) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 21.3
(3)
P 		8.5
(-3)
A 		13.1
(-0.8)
A 		16.1
(0.6)
P 		13
B 28.9
(3)
P 		10.7
(-3)
P 		13.6
(-2)
P 		26.1
(2.1)
P 		18
C 14.3
(-0.9)
A 		11.3
(-2.8)
P 		11
(-3)
P 		20.5
(3)
P 		10
avr 21.5
(3) 		10.2
(-3) 		12.6
(-1.7) 		20.9
(2.7) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 12
(-3)
P 		13.1
(-1.3)
A 		12.3
(-2.5)
P 		12.7
(-1.9)
P 		13.4
(-0.8)
P 		15.9
(3)
M 		4
B 22.9
(2.2)
P 		10.7
(-1.8)
A 		10.1
(-2)
A 		7
(-3)
A 		21.9
(1.9)
P 		25.4
(3)
P 		18
C 16.8
(0.3)
M 		17.3
(0.4)
P 		28.3
(3)
P 		6
(-2.3)
A 		3.1
(-3)
A 		17.1
(0.3)
P 		25
avr 17.2
(1.7) 		13.7
(-0.2) 		16.9
(1.6) 		8.6
(-3) 		12.8
(-0.7) 		19.5
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180974_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3757
Sequence Type Exemplar sequence
Representative Public ID C09H10.5 NCBI
Target Description C09H10.5 /REP_DB=WormBase Gene ID /WP=CE02134 /TR=Q17882 /GB=CAA90437.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063977(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063977 NCBI Caenorhabditis elegans C09H10.5 (C09H10.5) mRNA, complete cds. 10/11 None
SNAP00000010331 ENSEMBL cdna:SNAP chromosome:CEL140:II:11100885:11102820:-1 9/11 None
GENEFINDER00000010343 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11100885:11102859:-1 9/11 None
C09H10.5 ENSEMBL cdna:known chromosome:CEL140:II:11100885:11101894:-1 gene:C09H10.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11100881-11101918(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C09H10.5
Entrez Gene 182478 Entrez gene
SwissProt Q17882 EMBL-EBI
WormBase CE28534 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90437 Hypothetical protein C09H10.5 [Caenorhabditis elegans] ref|NP_496378.1| C09H10.5 [Caenorhabditis elegans] 4.0E-63
blast CAA90437 Hypothetical protein C09H10.5 [Caenorhabditis elegans] ref|NP_496378.1| C09H10.5 [Caenorhabditis elegans] 5.0E-63
blast AAB04581 Hypothetical protein C09B7.2 [Caenorhabditis elegans] ref|NP_508473.1| C09B7.2 [Caenorhabditis elegans] 5.0E-44
blast AAB04581 Hypothetical protein C09B7.2 [Caenorhabditis elegans] ref|NP_508473.1| C09B7.2 [Caenorhabditis elegans] 7.0E-44
blast AAB04581 Hypothetical protein C09B7.2 [Caenorhabditis elegans] ref|NP_508473.1| C09B7.2 [Caenorhabditis elegans] 2.0E-39
blast CAE59571 Hypothetical protein CBG02968 [Caenorhabditis briggsae] 2.0E-29
blast CAE59571 Hypothetical protein CBG02968 [Caenorhabditis briggsae] 3.0E-28
Sequence
Target Sequence 
>C. ELEGANS:180974_AT
ggatcggactccaaaagtaccataaaaatactaccaaaaacttttggatcgcgagacgcg
tgctcgagaaacggcatctcgtcaaaatggacatgtcgaaggcgtcacaagaacaattct
cgatgttcatgaatttgttgtgcatcaccgtcaaggatatgcctataacagagtattata
ccagctatattctgtgggaagaggtcgaatttctcgaaggagtcaaggatttattggacc
caacgagcgccttcgaggatcgtcgatcttcattataccatcacctcgggcataactttg
cctcaaattgttcactgaaggatgacaataacgttcgcgatgctcacgtcgtcgtagaag
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCGGACTCCAAAAGTACCATAA 412 503 26 Antisense
AAAACTTTTGGATCGCGAGACGCGT 300 131 62 Antisense
GACGCGTGCTCGAGAAACGGCATCT 207 381 80 Antisense
TGGACATGTCGAAGGCGTCACAAGA 456 547 113 Antisense
ATTTGTTGTGCATCACCGTCAAGGA 653 15 158 Antisense
ATTTATTGGACCCAACGAGCGCCTT 378 11 254 Antisense
CGCCTTCGAGGATCGTCGATCTTCA 190 257 273 Antisense
CGATCTTCATTATACCATCACCTCG 178 249 289 Antisense
TCACCTCGGGCATAACTTTGCCTCA 316 623 306 Antisense
TGACAATAACGTTCGCGATGCTCAC 682 571 348 Antisense
GCGATGCTCACGTCGTCGTAGAAGA 628 287 362 Antisense
Sequence Source Affymetrix Proprietary Database