[Home] | [Total List]

[180972_at]

Description ZC395.1 /REP_DB=WormBase Gene ID /WP=CE01435 /TR=Q9GYF8 /GB=AAG00034.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 47      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 180
(3)
P 		66.6
(-3)
A 		81.7
(-2.2)
A 		95.2
(-1.5)
A 		113
B 140.4
(3)
P 		84.2
(-0.8)
A 		78.9
(-1.2)
A 		51.6
(-3)
A 		89
C 135.2
(3)
P 		90.5
(-1.7)
A 		86.9
(-2.1)
P 		78.3
(-3)
A 		57
avr 151.9
(3) 		80.4
(-2.6) 		82.5
(-2.4) 		75
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 130.5
(3)
P 		91.3
(-0.9)
A 		83.5
(-1.7)
A 		124.2
(2.4)
M 		102.4
(0.2)
A 		70.6
(-3)
A 		60
B 76.9
(-1.1)
P 		120.7
(3)
P 		76.1
(-1.2)
A 		120.9
(3)
M 		100.4
(1.1)
A 		56.8
(-3)
A 		64
C 84
(-0.2)
A 		96.3
(1.2)
P 		58
(-3)
A 		112.9
(3)
A 		59
(-2.9)
A 		59.1
(-2.9)
A 		55
avr 97.1
(0.7) 		102.8
(1.3) 		72.5
(-1.9) 		119.3
(3) 		87.3
(-0.4) 		62.2
(-3) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 65.5
(3)
P 		14.5
(-2.9)
A 		21.4
(-2.1)
A 		13.9
(-3)
A 		52
B 44.8
(3)
P 		20.8
(-1.3)
A 		18.3
(-1.7)
A 		11
(-3)
A 		34
C 44.7
(3)
P 		26
(-0.6)
A 		30.3
(0.3)
P 		13.2
(-3)
A 		32
avr 51.7
(3) 		20.4
(-1.8) 		23.3
(-1.4) 		12.7
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 24.1
(-0.3)
P 		32.5
(3)
A 		18.2
(-2.6)
A 		31.5
(2.6)
M 		30.9
(2.4)
A 		17.2
(-3)
A 		15
B 26.7
(-0.8)
P 		40.2
(2.8)
P 		18.5
(-3)
A 		32
(0.6)
M 		40.8
(3)
A 		21.2
(-2.3)
A 		22
C 31.2
(3)
A 		29.4
(2.3)
P 		14.8
(-3)
A 		22.7
(-0.1)
A 		19.1
(-1.4)
A 		19.8
(-1.2)
A 		16
avr 27.3
(0.6) 		34
(3) 		17.2
(-3) 		28.7
(1.1) 		30.3
(1.7) 		19.4
(-2.2) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180972_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7927
Sequence Type Exemplar sequence
Representative Public ID ZC395.1 NCBI
Target Description ZC395.1 /REP_DB=WormBase Gene ID /WP=CE01435 /TR=Q9GYF8 /GB=AAG00034.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065729(11), NM_065730(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065729 NCBI Caenorhabditis elegans ZC395.1 (ZC395.1) mRNA, complete cds. 11/11 None
NM_065730 NCBI Caenorhabditis elegans T15B12.1 (T15B12.1) mRNA, complete cds. 9/11 None
GENEFINDER00000016765 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5288140:5290773:1 10/11 None
ZC395.1 ENSEMBL cdna:known chromosome:CEL140:III:5288137:5292153:1 gene:ZC395.1 11/11 None
T15B12.1 ENSEMBL cdna:known chromosome:CEL140:III:5288184:5298309:1 gene:T15B12.1 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016755 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5288138-5292152(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZC395.1
T15B12.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498131 T15B12.1 [Caenorhabditis elegans] gb|AAA21559.1| Hypothetical protein T15B12.1a [Caenorhabditis elegans] 1.0E-128
blast NP_498130 ZC395.1 [Caenorhabditis elegans] 1.0E-114
blast CAE73678 Hypothetical protein CBG21187 [Caenorhabditis briggsae] 1.0E-104
blast NP_498130 ZC395.1 [Caenorhabditis elegans] 1.0E-104
blast CAE73679 Hypothetical protein CBG21188 [Caenorhabditis briggsae] 1.0E-90
Protein Domains
Database ID Description E-Value
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 9.6E-35
Sequence
Target Sequence 
>C. ELEGANS:180972_AT
gtcgcccacagtcttcaataagtttagatgaaaaaaggcacagaaatcgaagtcttggat
gtatttctcgttattctgcatctccattgccaggattttcagcctttttgggaactataa
caagggtatcaactggtcaaactacatttcatccatatggagttcaggaaccattatcac
cacaatcttgtgttggagtattcacctcaatgtattgtagtacaccatcggaatattcat
ttcaaccaatgttcagtttatctgacactcctccattagtatctccagaaccagatgatg
acgtggatttttcgccggatatgacaaggaagaaagagtctgcttcatcaggatatggat
ctgctggaagtgaatctgaacatgatttgatgtcattacggagtgacgatatcaagtttc
gtggacggctccgtcatagaggttctcacgttggaggacaagcacaggatcttcatcgtc
ggcgttcgatgcctccaacatataatttcgagagtgatgtgacccgagtcgtgtgtcatg
atggatatgccacatatgaaactaatgtgttcccctgtataatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGCCCACAGTCTTCAATAAGTTT 318 475 38 Antisense
TGGATGTATTTCTCGTTATTCTGCA 472 549 93 Antisense
TATTCTGCATCTCCATTGCCAGGAT 658 663 109 Antisense
CAGGAACCATTATCACCACAATCTT 160 209 202 Antisense
TTCAGTTTATCTGACACTCCTCCAT 33 689 289 Antisense
TCCTCCATTAGTATCTCCAGAACCA 693 591 306 Antisense
GATGACGTGGATTTTTCGCCGGATA 66 411 334 Antisense
GCTCCGTCATAGAGGTTCTCACGTT 703 295 465 Antisense
GACAAGCACAGGATCTTCATCGTCG 525 365 494 Antisense
GATGTGACCCGAGTCGTGTGTCATG 133 409 553 Antisense
AACTAATGTGTTCCCCTGTATAATC 260 141 597 Antisense
Sequence Source Affymetrix Proprietary Database