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[180965_at]

Description W04B5.1 /REP_DB=WormBase Gene ID /WP=CE20138 /TR=Q9UA59 /GB=AAC68914.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 73      4grp_high_8_8 > 06      6grp_total > 74      4grp_total > 02      6grp_high1_sub > 03_04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1025
1 2 3 4 range
A 159.6
(-2.7)
P 		185.7
(-2.5)
A 		120.1
(-3)
A 		894.7
(3)
P 		775
B 138.5
(-3)
A 		140.1
(-3)
A 		172.8
(-2.7)
P 		887.2
(3)
P 		749
C 192.2
(-2.7)
P 		134.3
(-3)
P 		144.2
(-2.9)
P 		1144.7
(3)
P 		1010
avr 163.4
(-2.9) 		153.4
(-2.9) 		145.7
(-3) 		975.5
(3) 		830

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 255
1 2 3 4 5 6 range
A 72.8
(-3)
A 		184.5
(-0.4)
P 		313.9
(2.7)
P 		327.6
(3)
P 		220.4
(0.5)
P 		223.7
(0.6)
P 		255
B 127.6
(-3)
P 		238.5
(1.7)
P 		266
(2.9)
P 		248.6
(2.1)
P 		269.5
(3)
P 		232.1
(1.4)
P 		142
C 115.1
(-3)
P 		214.1
(0.4)
P 		225.5
(0.8)
P 		288.3
(3)
P 		206
(0.1)
P 		286.6
(2.9)
P 		173
avr 105.2
(-3) 		212.4
(0.5) 		268.5
(2.4) 		288.2
(3) 		232
(1.2) 		247.5
(1.7) 		183
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 58.1
(-1.4)
P 		40.3
(-2.5)
A 		31.4
(-3)
A 		131
(3)
P 		100
B 44.2
(-2.6)
A 		34.6
(-3)
A 		40
(-2.8)
P 		189.1
(3)
P 		155
C 63.6
(-2)
P 		38.6
(-3)
P 		50.3
(-2.5)
P 		193
(3)
P 		154
avr 55.3
(-2.2) 		37.8
(-3) 		40.6
(-2.9) 		171
(3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 13.4
(-3)
A 		65.6
(1.5)
P 		68.4
(1.7)
P 		83.1
(3)
P 		66.5
(1.6)
P 		54.5
(0.5)
P 		70
B 44.4
(-3)
P 		79.4
(0.2)
P 		64.6
(-1.1)
P 		65.8
(-1)
P 		109.5
(3)
P 		86.6
(0.9)
P 		65
C 42.7
(-3)
P 		65.3
(-0.5)
P 		57.4
(-1.3)
P 		58
(-1.3)
P 		66.7
(-0.3)
P 		95.9
(3)
P 		53
avr 33.5
(-3) 		70.1
(1.6) 		63.5
(0.8) 		69
(1.5) 		80.9
(3) 		79
(2.8) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180965_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6913
Sequence Type Exemplar sequence
Representative Public ID W04B5.1 NCBI
Target Description W04B5.1 /REP_DB=WormBase Gene ID /WP=CE20138 /TR=Q9UA59 /GB=AAC68914.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065153(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065153 NCBI Caenorhabditis elegans W04B5.1 (W04B5.1) mRNA, complete cds. 10/11 None
SNAP00000019374 ENSEMBL cdna:SNAP chromosome:CEL140:III:2428509:2429344:1 10/11 None
W04B5.1 ENSEMBL cdna:known chromosome:CEL140:III:2428212:2429351:1 gene:W04B5.1 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000019377 2/11 Cross Hyb Matching Probes None
GENEFINDER00000026605 1/11 Cross Hyb Matching Probes None
SNAP00000026596 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2428508-2429344(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W04B5.1
Entrez Gene 175362 Entrez gene
SwissProt Q9UA59 EMBL-EBI
WormBase CE28846 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast ABA00182 Hypothetical protein ZK380.5 [Caenorhabditis elegans] 2.0E-49
blast AAC68914 Hypothetical protein W04B5.1 [Caenorhabditis elegans] ref|NP_497554.1| W04B5.1 [Caenorhabditis elegans] 8.0E-28
blast AAC68914 Hypothetical protein W04B5.1 [Caenorhabditis elegans] ref|NP_497554.1| W04B5.1 [Caenorhabditis elegans] 4.0E-21
Sequence
Target Sequence 
>C. ELEGANS:180965_AT
gattatctaaatgaggccaaccaagctacacgttttcaaaatgtgtggcttccaggacga
tatactgattgcaatcacatgaaaagaaaacaagaggaaattccacttggcggagttctt
cgtcatttcaatgatgtggatgaactggtggcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTATCTAAATGAGGCCAACCAAG 39 429 34 Antisense
AAATGAGGCCAACCAAGCTACACGT 10 121 42 Antisense
GCCAACCAAGCTACACGTTTTCAAA 335 277 49 Antisense
ACGTTTTCAAAATGTGTGGCTTCCA 347 91 63 Antisense
AAATGTGTGGCTTCCAGGACGATAT 158 121 72 Antisense
GTGGCTTCCAGGACGATATACTGAT 608 491 78 Antisense
AGGACGATATACTGATTGCAATCAC 369 55 87 Antisense
GAGGAAATTCCACTTGGCGGAGTTC 2 405 127 Antisense
AAATTCCACTTGGCGGAGTTCTTCG 16 115 131 Antisense
TTGGCGGAGTTCTTCGTCATTTCAA 8 709 140 Antisense
AATGATGTGGATGAACTGGTGGCGA 133 157 163 Antisense
Sequence Source Affymetrix Proprietary Database