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[180964_s_at]

Description H04D03.3 /REP_DB=WormBase Gene ID /WP=CE16167 /TR=O45608 /GB=CAA15959.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 58      4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_highest_nonorm > 82      6grp_total > 48      4grp_total > 36      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 253
1 2 3 4 range
A 445.2
(-2.2)
P 		609.1
(3)
P 		420.3
(-3)
P 		478.4
(-1.2)
P 		189
B 491.9
(3)
P 		456.4
(-0.3)
P 		450.9
(-0.8)
P 		427.5
(-3)
P 		64
C 401.1
(1.7)
P 		356.6
(-3)
P 		407.3
(2.4)
P 		413.1
(3)
P 		57
avr 446.1
(-0.5) 		474
(3) 		426.2
(-3) 		439.7
(-1.3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 347
1 2 3 4 5 6 range
A 423.5
(0.3)
P 		447.6
(0.8)
P 		291.3
(-2.4)
P 		263
(-3)
P 		344.8
(-1.3)
P 		552.3
(3)
P 		289
B 333.2
(-0.8)
P 		387.1
(1.5)
P 		302.5
(-2.1)
P 		282.1
(-3)
P 		317.8
(-1.5)
P 		423.5
(3)
P 		141
C 436.5
(3)
P 		341.7
(0.5)
P 		393.8
(1.9)
P 		205
(-3)
P 		397.2
(2)
P 		360.7
(1)
P 		232
avr 397.7
(1.5) 		392.1
(1.4) 		329.2
(-0.6) 		250
(-3) 		353.3
(0.2) 		445.5
(3) 		196
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 162.1
(3)
P 		132.2
(1.1)
P 		109.9
(-0.4)
P 		70
(-3)
P 		92
B 156.9
(3)
P 		112.7
(-1)
P 		104.5
(-1.8)
P 		91.1
(-3)
P 		66
C 132.8
(2.2)
P 		102.5
(-0.3)
P 		142
(3)
P 		69.7
(-3)
P 		72
avr 150.6
(3) 		115.8
(0.2) 		118.8
(0.4) 		76.9
(-3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 121
1 2 3 4 5 6 range
A 78.1
(-2.1)
P 		159.2
(3)
P 		63.4
(-3)
P 		66.7
(-2.8)
P 		104
(-0.5)
P 		134.5
(1.5)
P 		96
B 115.9
(0)
P 		128.9
(0.9)
P 		73.4
(-3)
P 		74.7
(-2.9)
P 		129.1
(1)
P 		157.9
(3)
P 		85
C 161.8
(3)
P 		104.3
(0.1)
P 		100.2
(-0.1)
P 		41.2
(-3)
P 		128.5
(1.3)
P 		120.7
(1)
P 		121
avr 118.6
(1.5) 		130.8
(2.5) 		79
(-1.6) 		60.9
(-3) 		120.5
(1.7) 		137.7
(3) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180964_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7784
Sequence Type Exemplar sequence
Representative Public ID H04D03.3 NCBI
Target Description H04D03.3 /REP_DB=WormBase Gene ID /WP=CE16167 /TR=O45608 /GB=CAA15959.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066905(11), NM_066904(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066905 NCBI Caenorhabditis elegans D2045.2 (D2045.2) mRNA, complete cds. 11/11 None
NM_066904 NCBI Caenorhabditis elegans H04D03.3 (H04D03.3) mRNA, complete cds. 11/11 None
SNAP00000026563 ENSEMBL cdna:SNAP chromosome:CEL140:III:10437538:10444827:1 11/11 None
GENEFINDER00000026565 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10443031:10444827:1 11/11 None
SNAP00000022537 ENSEMBL cdna:SNAP chromosome:CEL140:III:10452779:10461262:-1 11/11 None
GENEFINDER00000022553 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10452779:10458675:-1 10/11 None
H04D03.3 ENSEMBL cdna:known chromosome:CEL140:III:10443031:10444827:1 gene:H04D03.3 11/11 None
D2045.2 ENSEMBL cdna:known chromosome:CEL140:III:10452601:10460330:-1 gene:D2045.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10443026-10444823(+) 100.0 100.0
chrIII:10452774-10454506(-) 99.92 99.92
Public Domain and Genome References
Gene Title

Ensembl H04D03.3
D2045.2
Entrez Gene 176464 Entrez gene
186680 Entrez gene
SwissProt Q18983 EMBL-EBI
O45608 EMBL-EBI
WormBase CE00639 Wormbase
CE16167 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:14985_S_AT expressed protein at
ATH1-121501:267609_AT expressed protein at
DROSOPHILA_2:1636849_AT dm
DROSGENOME1:153039_AT dm
CHICKEN:GGA.16385.1.S1_S_AT similar to Expressed sequence AI314180 gga
CHICKEN:GGAAFFX.24752.1.S1_AT similar to Expressed sequence AI314180 gga
HU35KSUBD:RC_D53588_S_AT KIAA0368 hs
HUGENEFL:AB002366_AT KIAA0368 hs
U133_X3P:HS.3852.1.A2_3P_AT KIAA0368 hs
U133_X3P:HS.3852.1.A1_3P_AT KIAA0368 hs
U133_X3P:HS.3852.0.A1_3P_A_AT KIAA0368 hs
HG-U133A_2:212427_AT KIAA0368 hs
HG-U133_PLUS_2:212427_AT KIAA0368 hs
HG-U133A:212427_AT KIAA0368 hs
HG-U133A_2:212428_AT KIAA0368 hs
HG-U133_PLUS_2:212428_AT KIAA0368 hs
HG-U133A:212428_AT KIAA0368 hs
HG-U133A_2:214356_S_AT KIAA0368 hs
HG-U133_PLUS_2:214356_S_AT KIAA0368 hs
HG-U133A:214356_S_AT KIAA0368 hs
HG-U95AV2:34414_AT KIAA0368 hs
U133_X3P:HS.192013.0.A1_3P_AT KIAA0368 hs
HG-U133_PLUS_2:236368_AT KIAA0368 hs
HG-U133B:236368_AT KIAA0368 hs
HG-U95E:79331_AT KIAA0368 hs
HG-U95D:73698_AT KIAA0368 hs
HG-U95D:83618_AT KIAA0368 hs
HG-U95E:86131_AT KIAA0368 hs
HG-U95D:87050_AT KIAA0368 hs
HU35KSUBD:RC_AA478486_AT KIAA0368 hs
MG-U74AV2:95577_AT expressed sequence AI314180 mm
MU11KSUBA:C78861_RC_S_AT expressed sequence AI314180 mm
MG-U74BV2:109545_AT expressed sequence AI314180 mm
MG-U74BV2:117081_AT expressed sequence AI314180 mm
MG-U74BV2:110442_AT expressed sequence AI314180 mm
MOE430A:1452122_AT expressed sequence AI314180 mm
MOUSE430A_2:1452122_AT expressed sequence AI314180 mm
MOUSE430_2:1452122_AT expressed sequence AI314180 mm
MOE430B:1436185_AT expressed sequence AI314180 mm
MOUSE430_2:1436185_AT expressed sequence AI314180 mm
MOE430B:1439127_AT expressed sequence AI314180 mm
MOUSE430_2:1439127_AT expressed sequence AI314180 mm
MOE430B:1456255_AT expressed sequence AI314180 mm
MOUSE430_2:1456255_AT expressed sequence AI314180 mm
MU19KSUBA:TC15086_AT Expressed sequence AI314180, mRNA (cDNA clone IMAGE:4953720) mm
MU19KSUBB:TC27839_AT Expressed sequence AI314180, mRNA (cDNA clone IMAGE:4953720) mm
MU19KSUBB:TC29856_AT Expressed sequence AI314180, mRNA (cDNA clone IMAGE:4953720) mm
RG-U34B:RC_AA996688_AT similar to KIAA0368 (predicted) rn
RAE230A:1389277_AT similar to KIAA0368 (predicted) rn
RAT230_2:1389277_AT similar to KIAA0368 (predicted) rn
RAE230B:1395353_AT similar to KIAA0368 (predicted) rn
RAT230_2:1395353_AT similar to KIAA0368 (predicted) rn
RAE230B:1393683_AT similar to KIAA0368 (predicted) rn
RAT230_2:1393683_AT similar to KIAA0368 (predicted) rn
RAE230A:1376405_AT Similar to KIAA0368 (predicted) rn
RAT230_2:1376405_AT Similar to KIAA0368 (predicted) rn
RAE230B:1378007_AT Similar to KIAA0368 (predicted) rn
RAT230_2:1378007_AT Similar to KIAA0368 (predicted) rn
RAE230B:1378280_AT Similar to KIAA0368 (predicted) rn
RAT230_2:1378280_AT Similar to KIAA0368 (predicted) rn
RAE230B:1380234_AT Similar to KIAA0368 (predicted) rn
RAT230_2:1380234_AT Similar to KIAA0368 (predicted) rn
RG-U34B:RC_AI044000_AT Similar to KIAA0368 (predicted) rn
RG-U34C:RC_AI176432_AT Similar to KIAA0368 (predicted) rn
YEAST_2:1770917_AT Major component of the proteasome; tethers the proteasome core particle to the regulatory particle, and enhances the stability of the proteasome Sc
Protein Similarities
Method ID Description E-Value
blast CAA84693 Hypothetical protein D2045.2 [Caenorhabditis elegans] ref|NP_499306.1| D2045.2 [Caenorhabditis elegans] 0.0
blast CAE71469 Hypothetical protein CBG18387 [Caenorhabditis briggsae] 0.0
blast CAA15959 Hypothetical protein H04D03.3 [Caenorhabditis elegans] ref|NP_499305.1| H04D03.3 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:180964_S_AT
gtgggcagtgatctcggaaagcgtcgaatcggccacatggttggcgaagaaaatcgacga
gaatgtgacgaagctgatcggagcccgaaacgacgcagattccgacgataacatggacgg
tctctcaaatctggaaaaagagattcgcgcgtcgaagctcgtcaccctcaatctgacagc
tctcgcgatatcactgccagcattcaacaacgcagaggaggccgagagcacgctgagcca
aattgccggatatgtaaagagtactgtaatcgcgtggaaatcgaagcaattctttttcaa
tgaactcgcgaaatctcttgaaaaatggacgccacgggagccagtggccgctgggaagct
gattgacaacattttggagcaggccgacgagctgtgtgctcaacagaagaagactgtcgc
cactgatgctctccaagttgtgcttcgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGGCAGTGATCTCGGAAAGCGTC 102 489 669 Antisense
AAAGCGTCGAATCGGCCACATGGTT 526 123 686 Antisense
ATCGGAGCCCGAAACGACGCAGATT 400 35 745 Antisense
ACATGGACGGTCTCTCAAATCTGGA 23 107 779 Antisense
AAGAGATTCGCGCGTCGAAGCTCGT 559 153 806 Antisense
CTCAATCTGACAGCTCTCGCGATAT 701 227 835 Antisense
TCGCGATATCACTGCCAGCATTCAA 114 601 851 Antisense
AGCACGCTGAGCCAAATTGCCGGAT 483 77 895 Antisense
GAGCAGGCCGACGAGCTGTGTGCTC 269 389 1045 Antisense
GAAGAAGACTGTCGCCACTGATGCT 679 337 1074 Antisense
ATGCTCTCCAAGTTGTGCTTCGAAT 213 43 1094 Antisense
Sequence Source Affymetrix Proprietary Database