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[180963_at]

Description Y43F8B.7 /REP_DB=WormBase Gene ID /WP=CE21892 /TR=Q9XWX2 /GB=CAA21514.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 9.5
(-3)
A 		33.1
(2.8)
A 		11.9
(-2.4)
A 		33.9
(3)
P 		24
B 33.6
(1.7)
A 		25.8
(-1.9)
A 		23.5
(-3)
A 		36.5
(3)
A 		13
C 6.4
(-3)
A 		49.2
(0.4)
P 		29.6
(-1.1)
P 		81.6
(3)
P 		75
avr 16.5
(-3) 		36
(0.4) 		21.7
(-2.1) 		50.7
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 49.6
(1.9)
A 		35.8
(-2.6)
P 		52.9
(3)
P 		34.5
(-3)
A 		44.1
(0.1)
P 		34.9
(-2.9)
P 		18
B 23.6
(-2.1)
A 		28.1
(-1.4)
P 		55.8
(3)
A 		22.6
(-2.2)
A 		18.5
(-2.9)
A 		17.6
(-3)
A 		38
C 26.6
(-3)
A 		58.5
(1.7)
P 		26.3
(-3)
P 		67
(3)
A 		26.8
(-2.9)
A 		30.3
(-2.4)
A 		41
avr 33.3
(-1) 		40.8
(1.6) 		45
(3) 		41.4
(1.8) 		29.8
(-2.2) 		27.6
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.4
(-2.6)
A 		7.2
(3)
A 		3.1
(-3)
A 		5
(-0.2)
P 		4
B 10.7
(3)
A 		6.4
(-2)
A 		5.5
(-3)
A 		7.8
(-0.3)
A 		5
C 2.1
(-3)
A 		14.1
(3)
P 		10.3
(1.1)
P 		13.8
(2.9)
P 		12
avr 5.4
(-3) 		9.2
(3) 		6.3
(-1.6) 		8.9
(2.5) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 9.1
(-2.3)
A 		12.7
(2.3)
P 		11.5
(0.7)
P 		8.8
(-2.6)
A 		13.3
(3)
P 		8.5
(-3)
P 		5
B 8.2
(-1.3)
A 		9.4
(-0.3)
P 		13.6
(3)
A 		6
(-3)
A 		7.5
(-1.8)
A 		6.5
(-2.6)
A 		8
C 9.8
(-1.3)
A 		17.8
(3)
P 		6.7
(-3)
P 		13.5
(0.7)
A 		8.7
(-1.9)
A 		10.1
(-1.2)
A 		11
avr 9
(-2.3) 		13.3
(3) 		10.6
(-0.3) 		9.4
(-1.8) 		9.8
(-1.3) 		8.4
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180963_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13193
Sequence Type Exemplar sequence
Representative Public ID Y43F8B.7 NCBI
Target Description Y43F8B.7 /REP_DB=WormBase Gene ID /WP=CE21892 /TR=Q9XWX2 /GB=CAA21514.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075390(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075390 NCBI Caenorhabditis elegans Y43F8B.7 (Y43F8B.7) mRNA, complete cds. 11/11 None
Y43F8B.7 ENSEMBL cdna:known chromosome:CEL140:V:19493333:19493803:1 gene:Y43F8B.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027178 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19493332-19493803(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F8B.7
Entrez Gene 189872 Entrez gene
SwissProt Q9XWX2 EMBL-EBI
WormBase CE21892 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21514 Hypothetical protein Y43F8B.7 [Caenorhabditis elegans] ref|NP_507791.1| Y43F8B.7 [Caenorhabditis elegans] 1.0E-71
blast CAB04908 Hypothetical protein W04A8.4 [Caenorhabditis elegans] ref|NP_493422.1| W04A8.4 [Caenorhabditis elegans] 1.0E-23
blast CAB60306 Hypothetical protein Y105C5A.14 [Caenorhabditis elegans] ref|NP_502882.1| Y105C5A.14 [Caenorhabditis elegans] 5.0E-21
Sequence
Target Sequence 
>C. ELEGANS:180963_AT
gttttcgttcgaggattatcacaatctacctgaaaaggctcaaatattcacctctgcttt
ggaggaatgcgaagagaggaacaagaagttcatatatgtggctctatgtgagtatttgtt
gtggggactttcaattttggaaactgtctggcacccctagtagccctacttgtaagactc
actcttgtggattcattttttggacaaacactcatctacttggagaccaactgagatata
cgatcatggacacaatcggtatgtatctcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTCGTTCGAGGATTATCACAAT 211 449 20 Antisense
AAGGCTCAAATATTCACCTCTGCTT 653 161 54 Antisense
TCACCTCTGCTTTGGAGGAATGCGA 443 625 67 Antisense
GCTCTATGTGAGTATTTGTTGTGGG 107 301 120 Antisense
TGTTGTGGGGACTTTCAATTTTGGA 78 561 136 Antisense
CAATTTTGGAAACTGTCTGGCACCC 79 181 151 Antisense
CACCCCTAGTAGCCCTACTTGTAAG 24 199 171 Antisense
AGCCCTACTTGTAAGACTCACTCTT 151 81 181 Antisense
GACTCACTCTTGTGGATTCATTTTT 630 373 195 Antisense
TTGGACAAACACTCATCTACTTGGA 336 689 219 Antisense
GGACACAATCGGTATGTATCTCATT 247 527 267 Antisense
Sequence Source Affymetrix Proprietary Database