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[180961_at]

Description F12D9.2 /REP_DB=WormBase Gene ID /WP=CE02634 /TR=Q19363 /GB=AAA80430.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 24      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 4.9
(-1.1)
A 		9.8
(3)
A 		6.7
(0.4)
A 		2.7
(-3)
A 		7
B 2.8
(-3)
A 		13.7
(-0.2)
A 		25.8
(3)
A 		8.6
(-1.5)
A 		23
C 3.5
(-3)
A 		6.9
(-2.6)
A 		6.9
(-2.6)
A 		55.1
(3)
A 		52
avr 3.7
(-3) 		10.1
(-0.9) 		13.1
(0.1) 		22.1
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 10.7
(3)
A 		7.4
(0.8)
A 		7
(0.5)
A 		3.1
(-2.1)
A 		1.8
(-3)
A 		2.6
(-2.5)
A 		9
B 32.9
(3)
A 		5.6
(-2.4)
A 		11.2
(-1.3)
A 		6.3
(-2.3)
A 		4
(-2.7)
A 		2.5
(-3)
A 		30
C 7.8
(-0.8)
A 		5.5
(-1.6)
A 		5.4
(-1.6)
A 		18.6
(3)
A 		8.2
(-0.6)
A 		1.5
(-3)
A 		17
avr 17.1
(3) 		6.2
(-1.4) 		7.9
(-0.7) 		9.3
(-0.1) 		4.7
(-2) 		2.2
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.8
(1.9)
A 		2.1
(3)
A 		1.8
(1.9)
A 		0.4
(-3)
A 		2
B 0.9
(-3)
A 		3.4
(-0.1)
A 		6
(3)
A 		1.8
(-1.9)
A 		5
C 1.2
(-3)
A 		2
(-2.4)
A 		2.4
(-2.1)
A 		9.3
(3)
A 		8
avr 1.3
(-3) 		2.5
(-0.1) 		3.4
(2) 		3.8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2
(1.2)
A 		2.6
(3)
A 		1.5
(-0.3)
A 		0.8
(-2.4)
A 		0.6
(-3)
A 		0.6
(-3)
A 		2
B 11.4
(3)
A 		1.9
(-2.4)
A 		2.7
(-2)
A 		1.7
(-2.5)
A 		1.6
(-2.6)
A 		0.9
(-3)
A 		11
C 2.9
(1.5)
A 		1.7
(-0.8)
A 		1.4
(-1.3)
A 		3.7
(3)
A 		2.7
(1.1)
A 		0.5
(-3)
A 		3
avr 5.4
(3) 		2.1
(-1.2) 		1.9
(-1.5) 		2.1
(-1.2) 		1.6
(-1.9) 		0.7
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180961_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16492
Sequence Type Exemplar sequence
Representative Public ID F12D9.2 NCBI
Target Description F12D9.2 /REP_DB=WormBase Gene ID /WP=CE02634 /TR=Q19363 /GB=AAA80430.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077064(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077064 NCBI Caenorhabditis elegans F12D9.2 (F12D9.2) mRNA, complete cds. 11/11 None
SNAP00000014487 ENSEMBL cdna:SNAP chromosome:CEL140:X:8646544:8647035:-1 11/11 None
GENEFINDER00000014488 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8646544:8647035:-1 11/11 None
F12D9.2 ENSEMBL cdna:known chromosome:CEL140:X:8646544:8647035:-1 gene:F12D9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8646542-8647034(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F12D9.2
Entrez Gene 184379 Entrez gene
SwissProt Q19363 EMBL-EBI
WormBase CE02634 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA80430 Hypothetical protein F12D9.2 [Caenorhabditis elegans] ref|NP_509465.1| F12D9.2 [Caenorhabditis elegans] 2.0E-77
blast CAE69597 Hypothetical protein CBG15824 [Caenorhabditis briggsae] 3.0E-12
blast CAE71763 Hypothetical protein CBG18753 [Caenorhabditis briggsae] 1.0E-11
Sequence
Target Sequence 
>C. ELEGANS:180961_AT
ttcaaggacgaaccgctatcgctcgtgagaccggaactgctccaaatgatgaagaaaccg
gtggaagaaaaagtaccagtgctttcacaaaaacgattccaaattcaaggagaccttaac
acgtccatcatcaattggctgaaaaccggcatagaagaaggtgatttggaaggagccgct
caaagagcgatcgaggcgctgcgtaagcgcaacgaagagctgaaactcctggaaatggat
ccgaatgcaatgaaaaaagtcgaacaattcgagactttgacagctatcatgggatcttct
tcgtccacggattcagcgcgtctaatagctatcctacaactaactgcggcagacaagacg
tctcgtaattcgtcccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAAGGACGAACCGCTATCGCTCG 129 681 61 Antisense
CTATCGCTCGTGAGACCGGAACTGC 541 223 76 Antisense
AGGAGACCTTAACACGTCCATCATC 427 55 168 Antisense
ACACGTCCATCATCAATTGGCTGAA 187 111 179 Antisense
AGGTGATTTGGAAGGAGCCGCTCAA 647 55 219 Antisense
AGAGCGATCGAGGCGCTGCGTAAGC 1 71 244 Antisense
GACAGCTATCATGGGATCTTCTTCG 316 369 339 Antisense
TCCACGGATTCAGCGCGTCTAATAG 105 585 364 Antisense
GCGCGTCTAATAGCTATCCTACAAC 660 95 376 Antisense
ATCCTACAACTAACTGCGGCAGACA 710 37 391 Antisense
CAAGACGTCTCGTAATTCGTCCCAA 240 185 414 Antisense
Sequence Source Affymetrix Proprietary Database