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[180960_at]

Description C13C12.2 /REP_DB=WormBase Gene ID /WP=CE08133 /TR=Q17944 /GB=CAB01125.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 80      6grp_total > 20      4grp_total > 49      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 531
1 2 3 4 range
A 5
(-3)
A 		423.3
(1.8)
P 		527.9
(3)
P 		107.4
(-1.8)
A 		523
B 10.1
(-3)
A 		396.5
(1.6)
P 		515.7
(3)
P 		20.7
(-2.9)
A 		506
C 5.7
(-3)
A 		512.7
(2.7)
P 		536.4
(3)
P 		63.5
(-2.3)
A 		531
avr 6.9
(-3) 		444.2
(2) 		526.7
(3) 		63.9
(-2.3) 		520

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 316
1 2 3 4 5 6 range
A 83.7
(-3)
A 		345.4
(3)
P 		175.1
(-0.9)
P 		309.4
(2.2)
P 		209.4
(-0.1)
P 		154.4
(-1.4)
P 		262
B 128.2
(-2.5)
P 		290.6
(3)
P 		262.8
(2.1)
P 		227.4
(0.9)
P 		196.1
(-0.2)
P 		114.1
(-3)
P 		177
C 132.2
(-3)
P 		330.5
(1.4)
P 		221.7
(-1)
P 		400.1
(3)
P 		156
(-2.4)
P 		130.9
(-3)
P 		269
avr 114.7
(-3) 		322.2
(3) 		219.9
(0) 		312.3
(2.7) 		187.2
(-0.9) 		133.1
(-2.5) 		208
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 1.8
(-3)
A 		91.9
(1)
P 		138
(3)
P 		15.7
(-2.4)
A 		136
B 3.2
(-3)
A 		97.9
(1.9)
P 		119.5
(3)
P 		4.4
(-2.9)
A 		116
C 1.9
(-3)
A 		147.4
(1.7)
P 		187
(3)
P 		10.7
(-2.7)
A 		185
avr 2.3
(-3) 		112.4
(1.5) 		148.2
(3) 		10.3
(-2.7) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 15.4
(-3)
A 		122.9
(3)
P 		38.1
(-1.7)
P 		78.5
(0.5)
P 		63.2
(-0.3)
P 		37.6
(-1.8)
P 		108
B 44.6
(-2.8)
P 		96.7
(3)
P 		63.8
(-0.6)
P 		60.2
(-1)
P 		79.7
(1.1)
P 		42.6
(-3)
P 		54
C 49
(-2.5)
P 		100.9
(3)
P 		56.4
(-1.7)
P 		80.5
(0.9)
P 		50.5
(-2.3)
P 		43.8
(-3)
P 		57
avr 36.3
(-3) 		106.8
(3) 		52.8
(-1.6) 		73.1
(0.1) 		64.5
(-0.6) 		41.3
(-2.6) 		71
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180960_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13370
Sequence Type Exemplar sequence
Representative Public ID C13C12.2 NCBI
Target Description C13C12.2 /REP_DB=WormBase Gene ID /WP=CE08133 /TR=Q17944 /GB=CAB01125.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073738(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073738 NCBI Caenorhabditis elegans C13C12.2 (C13C12.2) mRNA, complete cds. 11/11 None
GENEFINDER00000034303 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12526486:12527924:-1 11/11 None
C13C12.2 ENSEMBL cdna:known chromosome:CEL140:V:12526486:12527914:-1 gene:C13C12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034299 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12526485-12527914(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C13C12.2
Entrez Gene 182568 Entrez gene
SwissProt Q17944 EMBL-EBI
WormBase CE08133 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01125 Hypothetical protein C13C12.2 [Caenorhabditis elegans] ref|NP_506139.1| C13C12.2 [Caenorhabditis elegans] 0.0
blast CAE75508 Hypothetical protein CBG23519 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:180960_AT
gcgtggacgatttcaagtgttcttaaatcttatcacttctgataaaccagcaatttctct
taatcgttggatggccggctccaaagattgtgagtgctgtttcaatcgtaatgctccaca
ctgtgactcattgtcatacttgtattgtaacatggaagactgtaagactggatgggctct
gcaatgccttcacaaatctgccaaagtggccgcatgttataccgtcgaattcaattatag
aatgacaacttcgtattccgatgttcttgaatttctgcgtgaaaataattatccaaatca
agacagtcaatatactcaaccaaatcaaccacttgtaccgacaactcgtcgtcccgtgac
tccgtcttttgaagctcgacaggcaaatcaacttcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGTGGACGATTTCAAGTGTTCTTA 176 293 756 Antisense
GATGGCCGGCTCCAAAGATTGTGAG 109 407 825 Antisense
GTGCTGTTTCAATCGTAATGCTCCA 223 479 849 Antisense
AATGCTCCACACTGTGACTCATTGT 102 167 865 Antisense
CTGGATGGGCTCTGCAATGCCTTCA 452 241 923 Antisense
AATGCCTTCACAAATCTGCCAAAGT 20 167 938 Antisense
CAAAGTGGCCGCATGTTATACCGTC 118 193 957 Antisense
GACAACTTCGTATTCCGATGTTCTT 619 365 999 Antisense
CACTTGTACCGACAACTCGTCGTCC 134 185 1085 Antisense
GTGACTCCGTCTTTTGAAGCTCGAC 667 481 1111 Antisense
AGCTCGACAGGCAAATCAACTTCAG 155 81 1128 Antisense
Sequence Source Affymetrix Proprietary Database