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[180959_s_at]

Description F42F12.4 /REP_DB=WormBase Gene ID /WP=CE16031 /TR=Q20340 /GB=CAA92175.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 54      6grp_total > 61      4grp_total > 16      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 566
1 2 3 4 range
A 846.3
(-3)
P 		958.5
(-1.6)
P 		911.1
(-2.2)
P 		1314.8
(3)
P 		469
B 754.3
(-3)
P 		987.3
(-0.5)
P 		1083.5
(0.5)
P 		1320
(3)
P 		566
C 830.9
(-3)
P 		852.6
(-2.7)
P 		965.6
(-1.1)
P 		1256.2
(3)
P 		425
avr 810.5
(-3) 		932.8
(-1.5) 		986.7
(-0.8) 		1297
(3) 		487

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1216
1 2 3 4 5 6 range
A 755.2
(-3)
P 		1235.6
(-0.6)
P 		1838.4
(2.3)
P 		1971.6
(3)
P 		1116.5
(-1.2)
P 		785.8
(-2.8)
P 		1216
B 808.6
(-3)
P 		1269.2
(-0.2)
P 		1813
(3)
P 		1602.8
(1.7)
P 		1165.7
(-0.9)
P 		818
(-2.9)
P 		1004
C 846.6
(-3)
P 		1138.9
(-1.4)
P 		1576.6
(1)
P 		1938.3
(3)
P 		1272.2
(-0.7)
P 		948.7
(-2.4)
P 		1092
avr 803.5
(-3) 		1214.6
(-0.6) 		1742.7
(2.4) 		1837.6
(3) 		1184.8
(-0.8) 		850.8
(-2.7) 		1034
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 308.2
(3)
P 		208.1
(-2.2)
P 		238.2
(-0.6)
P 		192.5
(-3)
P 		116
B 240.5
(-3)
P 		243.8
(-2.5)
P 		251.1
(-1.4)
P 		281.3
(3)
P 		41
C 275.1
(0)
P 		245.1
(-1.4)
P 		336.5
(3)
P 		211.8
(-3)
P 		125
avr 274.6
(2.9) 		232.3
(-2.5) 		275.3
(3) 		228.5
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 361
1 2 3 4 5 6 range
A 139.2
(-3)
P 		439.4
(2)
P 		400.4
(1.3)
P 		500
(3)
P 		336.9
(0.3)
P 		191.3
(-2.1)
P 		361
B 281.3
(-3)
P 		422.5
(1.4)
P 		440.2
(2)
P 		424.5
(1.5)
P 		473.6
(3)
P 		305
(-2.3)
P 		192
C 313.8
(-3)
P 		347.5
(-0.9)
P 		401.3
(2.4)
P 		389.8
(1.7)
P 		411.7
(3)
P 		317.6
(-2.8)
P 		98
avr 244.8
(-3) 		403.1
(1.9) 		414
(2.3) 		438.1
(3) 		407.4
(2) 		271.3
(-2.2) 		193
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180959_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16858
Sequence Type Exemplar sequence
Representative Public ID F42F12.4 NCBI
Target Description F42F12.4 /REP_DB=WormBase Gene ID /WP=CE16031 /TR=Q20340 /GB=CAA92175.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077671(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077671 NCBI Caenorhabditis elegans F42F12.4 (F42F12.4) mRNA, complete cds. 11/11 None
SNAP00000001332 ENSEMBL cdna:SNAP chromosome:CEL140:X:12351985:12352866:-1 11/11 None
GENEFINDER00000001334 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12351985:12352866:-1 11/11 None
F42F12.4.2 ENSEMBL cdna:known chromosome:CEL140:X:12351899:12352870:-1 gene:F42F12.4 11/11 None
F42F12.4.1 ENSEMBL cdna:known chromosome:CEL140:X:12351966:12352868:-1 gene:F42F12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12351984-12352866(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42F12.4
Entrez Gene 181393 Entrez gene
SwissProt Q20340 EMBL-EBI
WormBase CE16031 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92175 Hypothetical protein F42F12.4 [Caenorhabditis elegans] ref|NP_510072.1| F42F12.4 [Caenorhabditis elegans] 1.0E-102
blast CAA92175 Hypothetical protein F42F12.4 [Caenorhabditis elegans] ref|NP_510072.1| F42F12.4 [Caenorhabditis elegans] 1.0E-97
blast CAE57260 Hypothetical protein CBG00142 [Caenorhabditis briggsae] 6.0E-84
blast CAE57260 Hypothetical protein CBG00142 [Caenorhabditis briggsae] 2.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR004313 EMBL-EBI Acireductone dioxygenase, ARD 1.3E-86
Pfam IPR004313 EMBL-EBI Acireductone dioxygenase, ARD 3.3E-81
Sequence
Target Sequence 
>C. ELEGANS:180959_S_AT
gatgaatgcagattttcgccgaacaaagaagctaccgaagaagatcttttgcgaattgga
gtcgaatgcacaaaagtcaactttgatgacgaacatgttcaagaggacttggatcgtctt
atcaagaaatatgacatgaattttcacgacgaagttcatatttgtcgtgccaccatgccg
aatttcgatgaaaaacttgacatcttctttgaagaacatcttcacgatgatgcggaactt
cgtgtaattaagcatggcgttgggttctttgacgtcagaacaaaagacgaagcttggatc
cgcatcccagttcgtcgaggagactttgtttttcttcccgcaggaatctaccatcgcttc
actaccgatccttcggaagacgtcgttgctctgagacttttccgaaataatcccaagtgg
actgcattcaaccgcaaagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGAATGCAGATTTTCGCCGAACA 633 411 55 Antisense
TTCATATTTGTCGTGCCACCATGCC 564 689 209 Antisense
GTGCCACCATGCCGAATTTCGATGA 74 479 221 Antisense
ATCTTCACGATGATGCGGAACTTCG 534 29 272 Antisense
GCATGGCGTTGGGTTCTTTGACGTC 47 309 306 Antisense
CGCATCCCAGTTCGTCGAGGAGACT 398 255 355 Antisense
TTTCTTCCCGCAGGAATCTACCATC 23 673 385 Antisense
GCTTCACTACCGATCCTTCGGAAGA 302 303 410 Antisense
CCTTCGGAAGACGTCGTTGCTCTGA 613 269 424 Antisense
GTTGCTCTGAGACTTTTCCGAAATA 499 439 439 Antisense
GTGGACTGCATTCAACCGCAAAGCT 423 491 471 Antisense
Sequence Source Affymetrix Proprietary Database