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[180958_at] 7TM chemoreceptor, srw family

Description K04F1.3 /REP_DB=WormBase Gene ID /WP=CE19954 /TR=Q9TXK8 /GB=AAC78163.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 05      6grp_cgc > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 44.8
(0.3)
A 		7.1
(-2.9)
A 		6.2
(-3)
A 		76.7
(3)
A 		71
B 30.6
(1.6)
A 		5.5
(-3)
A 		15.7
(-1.1)
A 		38.3
(3)
P 		33
C 13.5
(-2.6)
A 		18.2
(-2)
A 		10.1
(-3)
A 		59.4
(3)
M 		49
avr 29.6
(-0.6) 		10.3
(-3) 		10.7
(-2.9) 		58.1
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 43.4
(3)
A 		5
(-3)
A 		41.9
(2.8)
A 		5
(-3)
A 		6.1
(-2.8)
A 		43.1
(3)
A 		38
B 15
(-0.7)
A 		4
(-3)
A 		23
(0.9)
A 		16.6
(-0.4)
A 		17.2
(-0.3)
A 		33
(3)
A 		29
C 16.9
(-2.8)
A 		33.3
(1.4)
A 		28.5
(0.2)
A 		39.3
(3)
A 		16.1
(-3)
A 		20.3
(-1.9)
A 		23
avr 25.1
(0.8) 		14.1
(-2.7) 		31.1
(2.7) 		20.3
(-0.7) 		13.1
(-3) 		32.1
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 16.3
(3)
A 		1.5
(-3)
A 		1.6
(-3)
A 		11.2
(0.9)
A 		15
B 9.8
(3)
A 		1.4
(-3)
A 		3.6
(-1.4)
A 		8.2
(1.9)
P 		8
C 4.5
(-2.1)
A 		5.2
(-1.4)
A 		3.5
(-3)
A 		10
(3)
M 		7
avr 10.2
(3) 		2.7
(-3) 		2.9
(-2.8) 		9.8
(2.7) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 8
(1.4)
A 		1.8
(-2.7)
A 		9.1
(2.1)
A 		1.3
(-3)
A 		1.9
(-2.6)
A 		10.5
(3)
A 		9
B 5.2
(-0.9)
A 		1.3
(-3)
A 		5.6
(-0.7)
A 		4.4
(-1.3)
A 		7
(0.1)
A 		12.3
(3)
A 		11
C 6.3
(-1.7)
A 		10.2
(3)
A 		7.3
(-0.5)
A 		7.9
(0.2)
A 		5.2
(-3)
A 		6.8
(-1.1)
A 		5
avr 6.5
(-0.7) 		4.4
(-3) 		7.3
(0.2) 		4.5
(-2.9) 		4.7
(-2.7) 		9.9
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180958_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15530
Sequence Type Exemplar sequence
Representative Public ID K04F1.3 NCBI
Target Description K04F1.3 /REP_DB=WormBase Gene ID /WP=CE19954 /TR=Q9TXK8 /GB=AAC78163.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071078(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071078 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-98) (srw-98) mRNA, complete cds. 9/11 None
K04F1.3 ENSEMBL cdna:known chromosome:CEL140:V:1676303:1678157:-1 gene:K04F1.3 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000011976 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1676229-1678157(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-98
Ensembl K04F1.3
Entrez Gene 186990 Entrez gene
SwissProt Q9TXK8 EMBL-EBI
WormBase CE34050 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC78163 Serpentine receptor, class w protein 98 [Caenorhabditis elegans] ref|NP_503479.2| Serpentine Receptor, class W family member (srw-98) [Caenorhabditis elegans] 0.0
blast AAB37921 Serpentine receptor, class w protein 97 [Caenorhabditis elegans] ref|NP_494034.1| Serpentine Receptor, class W family member (srw-97) [Caenorhabditis elegans] 1.0E-111
blast CAE62422 Hypothetical protein CBG06512 [Caenorhabditis briggsae] 1.0E-105
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503479.2 7 41-60,67-89,104-121,159-181,231-253,278-300,315-337
K04F1.3 7 41-60,67-89,104-121,159-181,231-253,278-300,315-337
Sequence
Target Sequence 
>C. ELEGANS:180958_AT
atccttctgccttttctaacagttttgctgattgtggaacttcagaaggcagagcaatta
cggaaaatttccagcatgacaaagagaattaggtttgtgggattttttttcaatgagtca
tttctgattggatttgcaaaaaaaaacgaattcatgagcagagtttgttttcgcaatttg
ataaactttcaaaaaaaaaaccagcaaacttttttcagctcagaaaaaaccactggcctt
gttatctttatgactgtctcattttttgtcctggaacttcccattggaatttcactaatc
tttcaagtgtcctataccgattttgggtatttatatctggccacttatatcaatcacgtt
tgtaattcgattttcataattaatgcgacaagccatggagtcttgtgttttttcatgtcg
acgcagtatagactgacggtggctcaaattttgaaaataaaggtgacagaggaatgcttt
caagtaacagagtattatttcagaacaaccaagtcacgacagttcacagtgtaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCTTCTGCCTTTTCTAACAGTTT 254 39 736 Antisense
TCATGAGCAGAGTTTGTTTTCGCAA 278 623 887 Antisense
AACCAGCAAACTTTTTTCAGCTCAG 159 147 934 Antisense
ACCACTGGCCTTGTTATCTTTATGA 584 85 964 Antisense
ATGACTGTCTCATTTTTTGTCCTGG 244 45 985 Antisense
TTTGTCCTGGAACTTCCCATTGGAA 450 667 1000 Antisense
TAATCTTTCAAGTGTCCTATACCGA 657 635 1031 Antisense
ATCTGGCCACTTATATCAATCACGT 408 33 1070 Antisense
AGCCATGGAGTCTTGTGTTTTTTCA 701 83 1126 Antisense
GTGTTTTTTCATGTCGACGCAGTAT 700 485 1140 Antisense
AAGTCACGACAGTTCACAGTGTACA 694 157 1246 Antisense
Sequence Source Affymetrix Proprietary Database