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[180956_at]

Description Y37H2C.1 /REP_DB=WormBase Gene ID /WP=CE19089 /TR=Q9XXF4 /GB=CAA19499.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 56      6grp_highest_nonorm > 91      6grp_total > 56      4grp_total > 13      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 564
1 2 3 4 range
A 354
(0.7)
P 		75.1
(-3)
A 		74.7
(-3)
A 		530.7
(3)
P 		456
B 386.9
(0.5)
P 		125.3
(-2.4)
A 		69.9
(-3)
A 		607.8
(3)
P 		538
C 384.1
(1.5)
P 		122.8
(-1.9)
A 		43.9
(-3)
A 		493
(3)
P 		449
avr 375
(0.9) 		107.7
(-2.4) 		62.8
(-3) 		543.8
(3) 		481

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 276
1 2 3 4 5 6 range
A 222.6
(-1.1)
P 		280.7
(0.5)
P 		224
(-1.1)
P 		214.3
(-1.4)
P 		154
(-3)
P 		374
(3)
P 		220
B 315.6
(1)
P 		262.9
(-0.2)
P 		210.5
(-1.4)
P 		182.7
(-2)
P 		139.3
(-3)
P 		405.7
(3)
P 		266
C 282.6
(0.7)
P 		265.8
(0.3)
P 		268.5
(0.4)
P 		248.4
(-0.1)
P 		129.9
(-3)
P 		377.3
(3)
P 		247
avr 273.6
(0.3) 		269.8
(0.2) 		234.3
(-0.7) 		215.1
(-1.2) 		141.1
(-3) 		385.7
(3) 		245
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 128.9
(3)
P 		16.3
(-3)
A 		19.5
(-2.8)
A 		77.7
(0.3)
P 		113
B 123.4
(2.7)
P 		30.9
(-2.2)
A 		16.2
(-3)
A 		129.5
(3)
P 		113
C 127.2
(3)
P 		35.3
(-1.9)
A 		15.3
(-3)
A 		83.1
(0.6)
P 		112
avr 126.5
(3) 		27.5
(-2.4) 		17
(-3) 		96.8
(1.4) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 41
(-3)
P 		99.8
(3)
P 		48.8
(-2.2)
P 		54.3
(-1.6)
P 		46.5
(-2.4)
P 		91.1
(2.1)
P 		59
B 109.8
(0.6)
P 		87.5
(-0.7)
P 		51.1
(-2.8)
P 		48.4
(-3)
P 		56.6
(-2.5)
P 		151.3
(3)
P 		103
C 104.8
(1.5)
P 		81.1
(-0.2)
P 		68.3
(-1.1)
P 		49.9
(-2.4)
P 		42
(-3)
P 		126.3
(3)
P 		84
avr 85.2
(-0) 		89.5
(0.3) 		56.1
(-2.4) 		50.9
(-2.8) 		48.4
(-3) 		122.9
(3) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180956_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13348
Sequence Type Exemplar sequence
Representative Public ID Y37H2C.1 NCBI
Target Description Y37H2C.1 /REP_DB=WormBase Gene ID /WP=CE19089 /TR=Q9XXF4 /GB=CAA19499.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075175(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075175 NCBI Caenorhabditis elegans Y37H2C.1 (Y37H2C.1) mRNA, complete cds. 11/11 None
GENEFINDER00000027740 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18270946:18280312:-1 11/11 None
Y37H2C.1 ENSEMBL cdna:known chromosome:CEL140:V:18275463:18280268:-1 gene:Y37H2C.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027739 6/11 Cross Hyb Matching Probes None
C28D4.11 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18275462-18280268(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37H2C.1
Entrez Gene 189635 Entrez gene
SwissProt Q9XXF4 EMBL-EBI
WormBase CE19089 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19499 Hypothetical protein Y37H2C.1 [Caenorhabditis elegans] ref|NP_507576.1| Y37H2C.1 [Caenorhabditis elegans] 0.0
blast CAE56315 Hypothetical protein CBG23978 [Caenorhabditis briggsae] 1.0E-168
blast CAE56315 Hypothetical protein CBG23978 [Caenorhabditis briggsae] 1.0E-136
blast CAE69718 Hypothetical protein CBG15989 [Caenorhabditis briggsae] 1.0E-108
blast CAE69718 Hypothetical protein CBG15989 [Caenorhabditis briggsae] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR001232 EMBL-EBI SKP1 component 3.7E-24
Pfam IPR001232 EMBL-EBI SKP1 component 1.6E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507576.1 9 274-296,352-374,407-429,450-467,477-494,506-528,570-592,599-616,626-644
Y37H2C.1 9 274-296,352-374,407-429,450-467,477-494,506-528,570-592,599-616,626-644
GENEFINDER00000027740 9 7-29,231-253,309-331,364-386,407-424,463-485,528-550,554-573,580-602
Sequence
Target Sequence 
>C. ELEGANS:180956_AT
gaccatccggattacaaagccaccaatggatatgcacaccgttaagctctcagcaaaaag
tattggaagatgataaaaacgttaagcgccggcctttgaactcaaaaatgtcatatgtat
ttatatcaattggatacgcgattatatgttcgatagtaacattcttgcactctggaatat
cagttcattccgccatctacttttcagccaaaggacaactagttatttatctattctttt
atattattcaaaaaatccgcttcgaatggagttccttcactttctcgtatacaatcagat
gtatttttctcatcgtatttctcgttttatttcaaacgctgaatcgctactttgcaaact
ttgccagtccatttaatttttatgaaagcccggcattgtcccgagagcttaactcagaat
gtatcatccctggaatagattggaataacgttcgtcactataacgctgtgataacctgct
cgtttttcattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCATCCGGATTACAAAGCCACCA 4 385 1613 Antisense
ATATGCACACCGTTAAGCTCTCAGC 318 21 1642 Antisense
GATAGTAACATTCTTGCACTCTGGA 584 425 1764 Antisense
GGAATATCAGTTCATTCCGCCATCT 508 531 1786 Antisense
CGCCATCTACTTTTCAGCCAAAGGA 618 257 1803 Antisense
TCCGCTTCGAATGGAGTTCCTTCAC 468 593 1868 Antisense
TTCCTTCACTTTCTCGTATACAATC 227 699 1884 Antisense
TGTATTTTTCTCATCGTATTTCTCG 299 561 1912 Antisense
GAATCGCTACTTTGCAAACTTTGCC 501 329 1953 Antisense
TATGAAAGCCCGGCATTGTCCCGAG 53 653 1993 Antisense
GTGATAACCTGCTCGTTTTTCATTC 327 483 2080 Antisense
Sequence Source Affymetrix Proprietary Database