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[180954_at]

Description C45G7.5 /REP_DB=WormBase Gene ID /WP=CE17551 /TR=O76355 /GB=AAC19183.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 60      6grp_highest_nonorm > 62      6grp_total > 61      4grp_total > 49      6grp_highest_sub > 04      6grp_cgc > 85      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 616
1 2 3 4 range
A 14.1
(-3)
A 		627.3
(3)
P 		620.9
(2.9)
P 		37.6
(-2.8)
A 		613
B 34.7
(-2.8)
A 		604.1
(3)
P 		565.8
(2.6)
P 		11.5
(-3)
A 		593
C 11.2
(-3)
A 		596.4
(3)
P 		546.7
(2.5)
P 		74.3
(-2.4)
A 		585
avr 20
(-3) 		609.3
(3) 		577.8
(2.7) 		41.1
(-2.8) 		589

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 789
1 2 3 4 5 6 range
A 645.2
(1.5)
P 		376.3
(-1)
P 		497.7
(0.1)
P 		804.4
(3)
P 		538.9
(0.5)
P 		162.9
(-3)
P 		642
B 590.3
(0.5)
P 		342.1
(-1.4)
P 		547.6
(0.2)
P 		922.1
(3)
P 		435.5
(-0.7)
P 		133.1
(-3)
P 		789
C 539.4
(1.1)
P 		339.1
(-1)
P 		719.9
(3)
P 		723
(3)
P 		641.2
(2.2)
P 		145.1
(-3)
P 		578
avr 591.6
(1) 		352.5
(-1.2) 		588.4
(1) 		816.5
(3) 		538.5
(0.5) 		147
(-3) 		670
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 5.2
(-3)
A 		136.2
(2)
P 		162.3
(3)
P 		5.5
(-3)
A 		157
B 11.1
(-2.6)
A 		149.2
(3)
P 		131.1
(2.3)
P 		2.4
(-3)
A 		147
C 3.7
(-3)
A 		171.5
(2.4)
P 		190.5
(3)
P 		12.5
(-2.7)
A 		187
avr 6.7
(-3) 		152.3
(2.7) 		161.3
(3) 		6.8
(-3) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 205
1 2 3 4 5 6 range
A 118.9
(-0.1)
P 		133.8
(0.4)
P 		108.4
(-0.5)
P 		204
(3)
P 		162.6
(1.5)
P 		39.7
(-3)
P 		164
B 205.4
(1.8)
P 		113.9
(-1)
P 		133
(-0.4)
P 		244.2
(3)
P 		176.9
(0.9)
P 		49.6
(-3)
P 		195
C 199.9
(2.7)
P 		103.5
(-0.9)
P 		183.2
(2.1)
P 		145.4
(0.7)
P 		207.5
(3)
P 		48.6
(-3)
P 		159
avr 174.7
(2.1) 		117.1
(-0.2) 		141.5
(0.8) 		197.9
(3) 		182.3
(2.4) 		46
(-3) 		152
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180954_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10580
Sequence Type Exemplar sequence
Representative Public ID C45G7.5 NCBI
Target Description C45G7.5 /REP_DB=WormBase Gene ID /WP=CE17551 /TR=O76355 /GB=AAC19183.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067803(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067803 NCBI Caenorhabditis elegans CaDHerin family member (cdh-10) (cdh-10) mRNA, complete cds. 11/11 None
SNAP00000040032 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2436566:2444338:-1 11/11 None
GENEFINDER00000040036 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2436566:2444338:-1 11/11 None
C45G7.5 ENSEMBL cdna:known chromosome:CEL140:IV:2436513:2463367:-1 gene:C45G7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2436571-2444344(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cdh-10
Ensembl C45G7.5
Entrez Gene 183476 Entrez gene
SwissProt Q5F4U0 EMBL-EBI
WormBase CE38044 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7018 microtubule-based movement inferred from electronic annotation QuickGO AmiGO
7156 homophilic cell adhesion inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5874 microtubule inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_500204 CaDHerin family member (cdh-10) [Caenorhabditis elegans] gb|AAW88406.1| Cadherin family protein 10 [Caenorhabditis elegans] 0.0
blast T33136 hypothetical protein C45G7.6 - Caenorhabditis elegans 0.0
blast T33135 hypothetical protein C45G7.5 - Caenorhabditis elegans 0.0
blast CAE74699 Hypothetical protein CBG22514 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002126 EMBL-EBI Cadherin 1.8E-5
Pfam IPR002126 EMBL-EBI Cadherin 4.1E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500204.2 1 2225-2247
C45G7.5 1 2225-2247
SNAP00000040032 1 791-813
GENEFINDER00000040036 1 1015-1037
Sequence
Target Sequence 
>C. ELEGANS:180954_AT
tgacagaaagctccgttacgtcctctccatgtcccgtaacgaatttggagcaaatttgga
aaaattccgccgccaaattcttgaagctattggtaaagacgatcagaaggccgggaaaca
gttggaaattcattttgatgaaccgaaagcggatagaaaaaattccacgtggacctccgt
atgtttctatttgacccgtcaaaatgcgatacttgacgagaatcaggcttcctcaataat
ttccccatcaaatgggcatatttcaaagcttcatcacattttcaaagttcaaaacgttga
tatgtgtgctccgaagccatctgccacgtcatcagaatccacatcatcctccaattctga
tatcccactgaacactttaatattgatcggagttgttggattattgattattgcactttt
ggcattgctgatttatgtttgttgtgtctcaagatatcagagatacttgaagcaaaaaac
tgatcagttgagatgctcttccagcgccggaagctattataaatctccgaatttaattcc
accaccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACAGAAAGCTCCGTTACGTCCTC 632 571 2358 Antisense
CTCTCCATGTCCCGTAACGAATTTG 258 231 2380 Antisense
TTCCGCCGCCAAATTCTTGAAGCTA 106 699 2422 Antisense
ACGTGGACCTCCGTATGTTTCTATT 114 95 2524 Antisense
CGTATGTTTCTATTTGACCCGTCAA 353 247 2535 Antisense
AATCAGGCTTCCTCAATAATTTCCC 152 169 2578 Antisense
TGATATGTGTGCTCCGAAGCCATCT 393 563 2655 Antisense
CCTCCAATTCTGATATCCCACTGAA 169 267 2705 Antisense
TTGCACTTTTGGCATTGCTGATTTA 313 703 2768 Antisense
ATCAGTTGAGATGCTCTTCCAGCGC 428 29 2840 Antisense
TCTCCGAATTTAATTCCACCACCAC 553 597 2881 Antisense
Sequence Source Affymetrix Proprietary Database