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[180953_at]

Description ZK131.11 /REP_DB=WormBase Gene ID /WP=CE18449 /TR=O62022 /GB=CAB05840.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 71      6grp_total > 25      4grp_total > 22      6grp_highest_sub > 01_02      6grp_high1_sub > 01_02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 430
1 2 3 4 range
A 708
(1.8)
P 		531.8
(-0.7)
P 		368.2
(-3)
P 		792.1
(3)
P 		424
B 765.2
(3)
P 		469.9
(-1.5)
P 		370
(-3)
P 		768.5
(3)
P 		399
C 798.2
(3)
P 		466.2
(-1.8)
P 		380.9
(-3)
P 		736.8
(2.1)
P 		417
avr 757.1
(2.9) 		489.3
(-1.2) 		373
(-3) 		765.8
(3) 		393

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 544
1 2 3 4 5 6 range
A 504.6
(0.2)
P 		744.3
(3)
P 		228.3
(-3)
P 		397.3
(-1)
P 		248.5
(-2.8)
P 		392.4
(-1.1)
P 		516
B 267.2
(-0)
P 		319.7
(3)
P 		276
(0.5)
P 		216.2
(-3)
P 		243.7
(-1.4)
P 		251.8
(-0.9)
P 		104
C 578.9
(3)
P 		320
(-1.1)
P 		466.1
(1.2)
P 		200.4
(-3)
P 		387.3
(-0)
P 		247.1
(-2.3)
P 		379
avr 450.2
(2.6) 		461.3
(3) 		323.5
(-1.4) 		271.3
(-3) 		293.2
(-2.3) 		297.1
(-2.2) 		190
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 179
1 2 3 4 range
A 257.8
(3)
P 		115.4
(-2.3)
P 		96.3
(-3)
P 		115.9
(-2.3)
P 		162
B 244
(3)
P 		116.1
(-1.8)
P 		85.7
(-3)
P 		163.8
(-0)
P 		158
C 264.2
(3)
P 		134
(-2.6)
P 		132.7
(-2.6)
P 		124.2
(-3)
P 		140
avr 255.3
(3) 		121.8
(-2.3) 		104.9
(-3) 		134.6
(-1.8) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 93
(-1.8)
P 		264.7
(3)
P 		49.7
(-3)
P 		100.8
(-1.6)
P 		75
(-2.3)
P 		95.5
(-1.7)
P 		215
B 93
(1.4)
P 		106.4
(3)
P 		67
(-1.8)
P 		57.3
(-3)
P 		99
(2.1)
P 		93.9
(1.5)
P 		49
C 214.6
(3)
P 		97.6
(-1)
P 		118.6
(-0.3)
P 		40.3
(-3)
P 		125.3
(-0.1)
P 		82.7
(-1.5)
P 		174
avr 133.5
(1.5) 		156.2
(3) 		78.4
(-2.2) 		66.1
(-3) 		99.8
(-0.8) 		90.7
(-1.4) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180953_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3017
Sequence Type Exemplar sequence
Representative Public ID ZK131.11 NCBI
Target Description ZK131.11 /REP_DB=WormBase Gene ID /WP=CE18449 /TR=O62022 /GB=CAB05840.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182246(11), NM_064485(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182246 NCBI Caenorhabditis elegans ZK131.11b (ZK131.11) mRNA, complete cds. 11/11 None
NM_064485 NCBI Caenorhabditis elegans ZK131.11a (ZK131.11) mRNA, complete cds. 11/11 None
SNAP00000009811 ENSEMBL cdna:SNAP chromosome:CEL140:II:13815924:13817049:1 10/11 None
GENEFINDER00000009833 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13814387:13817049:1 11/11 None
ZK131.11b ENSEMBL cdna:known chromosome:CEL140:II:13792126:13817549:1 gene:ZK131.11 11/11 A 
ZK131.11a ENSEMBL cdna:known chromosome:CEL140:II:13807815:13817049:1 gene:ZK131.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13792173-13817046(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK131.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD54180 Hypothetical protein ZK131.11b [Caenorhabditis elegans] emb|CAD54120.1| Hypothetical protein ZK131.11b [Caenorhabditis elegans] ref|NP_872046.1| ZK131.11b [Caenorhabditis elegans] 0.0
blast CAB05840 Hypothetical protein ZK131.11a [Caenorhabditis elegans] ref|NP_496886.2| ZK131.11a [Caenorhabditis elegans] 1.0E-164
blast CAE73269 Hypothetical protein CBG20685 [Caenorhabditis briggsae] 1.0E-157
blast CAB05840 Hypothetical protein ZK131.11a [Caenorhabditis elegans] ref|NP_496886.2| ZK131.11a [Caenorhabditis elegans] 1.0E-147
blast CAD54180 Hypothetical protein ZK131.11b [Caenorhabditis elegans] emb|CAD54120.1| Hypothetical protein ZK131.11b [Caenorhabditis elegans] ref|NP_872046.1| ZK131.11b [Caenorhabditis elegans] 1.0E-147
Sequence
Target Sequence 
>C. ELEGANS:180953_AT
acgccgtctcaacgaccgaaatgaatcgatccggagtacgtggcggcccgaacgcggaga
gcaacacgacgttcctgagagctacgaagaggttcttcaagaagatctacacatcggcga
cacttcccaagaaacagaatagcacgtctatggataatttccaaaaatcgtcggtgttct
ttgaggataccgctcatcatcataatccgaatatggatggaagaattctgaagaaggcgc
cattgtcgactgatgagaatgattattcaaatcacctcgatgatgattatgatgacgaga
caatgcgctccgaaaatgcgacgatggacattagctatccggacagtggattcgagatgg
acagagcttcaacaccggaacaatcgagtgtctccatgacatccacgtcgaaaagcggag
atgatccggtcaacttcaccaatttgttcgagcagctgaaaagggagatgaaagaaatgc
gagaacgcgacgctcaaatcctttccgatcttcaacgcgtcgagacccaaatccaatcgg
tgaagcaagcgcaaatcctcgcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGCCGTCTCAACGACCGAAATGAA 141 89 839 Antisense
AATCGATCCGGAGTACGTGGCGGCC 334 167 862 Antisense
GAGCAACACGACGTTCCTGAGAGCT 185 391 897 Antisense
AAGATCTACACATCGGCGACACTTC 376 155 940 Antisense
GATACCGCTCATCATCATAATCCGA 61 425 1024 Antisense
GAAGAAGGCGCCATTGTCGACTGAT 148 341 1068 Antisense
GATGGACAGAGCTTCAACACCGGAA 191 407 1194 Antisense
AATCGAGTGTCTCCATGACATCCAC 387 169 1220 Antisense
GATGATCCGGTCAACTTCACCAATT 555 409 1258 Antisense
GAGAACGCGACGCTCAAATCCTTTC 184 393 1319 Antisense
TGAAGCAAGCGCAAATCCTCGCCTC 353 575 1379 Antisense
Sequence Source Affymetrix Proprietary Database