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[180952_at] 7TM chemoreceptor, srw family

Description W06G6.13 /REP_DB=WormBase Gene ID /WP=CE25144 /TR=Q9NAN0 /GB=CAB76728.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 02      6grp_cgc > 64      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 6.3
(-2.6)
A 		3.4
(-3)
A 		8.5
(-2.4)
A 		52
(3)
A 		49
B 2.7
(-3)
A 		3
(0)
A 		3.3
(3)
A 		3.3
(3)
A 		1
C 1.8
(-3)
A 		6.4
(-2.5)
A 		4.3
(-2.7)
A 		57.8
(3)
P 		56
avr 3.6
(-3) 		4.3
(-2.9) 		5.4
(-2.7) 		37.7
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 10.6
(-0.3)
A 		4.5
(-2.6)
A 		3.3
(-3)
A 		5.2
(-2.3)
A 		19.8
(3)
A 		3.9
(-2.8)
A 		17
B 2
(-3)
A 		35.6
(3)
A 		4.9
(-2.5)
A 		2.3
(-2.9)
A 		3.7
(-2.7)
A 		3.6
(-2.7)
A 		34
C 2.3
(-3)
A 		4
(-1.1)
A 		7.1
(2.2)
A 		7.8
(3)
A 		4
(-1.1)
A 		4.7
(-0.4)
A 		6
avr 5
(-2.5) 		14.7
(3) 		5.1
(-2.4) 		5.1
(-2.4) 		9.2
(-0.1) 		4.1
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.3
(-1.6)
A 		0.7
(-3)
A 		2.2
(-1.7)
A 		7.6
(3)
A 		7
B 0.9
(3)
A 		0.7
(-3)
A 		0.8
(0)
A 		0.7
(-3)
A 		0
C 0.6
(-3)
A 		1.8
(-2.2)
A 		1.5
(-2.4)
A 		9.7
(3)
P 		9
avr 1.3
(-2.8) 		1.1
(-3) 		1.5
(-2.5) 		6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2
(-1.5)
A 		1.6
(-2)
A 		0.7
(-3)
A 		1.3
(-2.3)
A 		6
(3)
A 		1
(-2.7)
A 		5
B 0.7
(-2.9)
A 		11.8
(3)
A 		1.2
(-2.7)
A 		0.6
(-3)
A 		1.5
(-2.5)
A 		1.3
(-2.6)
A 		11
C 0.9
(-3)
A 		1.2
(-1)
A 		1.8
(3)
A 		1.6
(1.7)
A 		1.3
(-0.3)
A 		1.6
(1.7)
A 		1
avr 1.2
(-3) 		4.9
(3) 		1.2
(-3) 		1.2
(-3) 		2.9
(-0.2) 		1.3
(-2.8) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180952_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12623
Sequence Type Exemplar sequence
Representative Public ID W06G6.13 NCBI
Target Description W06G6.13 /REP_DB=WormBase Gene ID /WP=CE25144 /TR=Q9NAN0 /GB=CAB76728.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074807(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074807 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-75) (srw-75) mRNA, complete cds. 11/11 None
W06G6.13 ENSEMBL cdna:known chromosome:CEL140:V:16636834:16638201:-1 gene:W06G6.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000000227 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16636833-16638201(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-75
Ensembl W06G6.13
Entrez Gene 189263 Entrez gene
SwissProt Q9NAN0 EMBL-EBI
WormBase CE25144 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB76728 Hypothetical protein W06G6.13 [Caenorhabditis elegans] ref|NP_507208.1| Serpentine Receptor, class W family member (srw-75) [Caenorhabditis elegans] 1.0E-158
blast CAB05643 Hypothetical protein W06G6.8 [Caenorhabditis elegans] ref|NP_507211.1| Serpentine Receptor, class W family member (srw-77) [Caenorhabditis elegans] 2.0E-94
blast CAB04139 Hypothetical protein F20E11.6 [Caenorhabditis elegans] ref|NP_507422.1| Serpentine Receptor, class W family member (srw-72) [Caenorhabditis elegans] 2.0E-85
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507208.1 7 15-37,46-68,105-122,134-156,191-213,246-268,278-300
W06G6.13 7 15-37,46-68,105-122,134-156,191-213,246-268,278-300
Sequence
Target Sequence 
>C. ELEGANS:180952_AT
atgtctggaagtactcaccgcttatcaagctatattttcgggtatttagtgttaattttt
ctgttaatcattcatttttcaatatcgtacagtttttattcggagttatgtattgaattt
cccaaagaatacagtgaaaaacaatatattcgaagaatgcgaaatacggagaatgttatt
gcaatagctcacaaatacaatttcattaccgggatgtccaagattcttgtcagtgttctt
taccccgttctagcggttattttgatttttgatgttcgaaagtctgcgaacatttcatcg
aaggctaacagcaaaagacaaattaaaataaagttgccaacatttttcaaataccacact
ggacgcatgattttgctcatgacaatattctacacaatagccagtgctcctggaggaata
tctgattttattgtgatcttctgcactgtcgggaacgactcaattctgatgctcattatt
ggatacggttccatatttatatccgcattattttgcttcaacgctgcgtctcattgtctc
atcaacttctcaatgtccacaaattaccggcaggccgcgagaatggcattcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCTGGAAGTACTCACCGCTTAT 284 47 382 Antisense
AGATTCTTGTCAGTGTTCTTTACCC 14 67 602 Antisense
GTCTGCGAACATTTCATCGAAGGCT 98 471 663 Antisense
ATACCACACTGGACGCATGATTTTG 91 23 732 Antisense
TGTGATCTTCTGCACTGTCGGGAAC 38 557 813 Antisense
CGGGAACGACTCAATTCTGATGCTC 682 243 831 Antisense
TACGGTTCCATATTTATATCCGCAT 418 647 865 Antisense
ATATCCGCATTATTTTGCTTCAACG 375 21 880 Antisense
TGCTTCAACGCTGCGTCTCATTGTC 532 579 895 Antisense
TCCACAAATTACCGGCAGGCCGCGA 590 587 937 Antisense
GGCAGGCCGCGAGAATGGCATTCAC 625 535 950 Antisense
Sequence Source Affymetrix Proprietary Database