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[180951_s_at]

Description T24B8.7B /REP_DB=WormBase Gene ID /WP=CE21201 /TR=P90865 /GB=CAA92762.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 17.2
(-1.6)
A 		5.5
(-3)
A 		7
(-2.8)
A 		54.6
(3)
A 		49
B 41
(3)
A 		3.8
(-2.8)
A 		2.6
(-3)
A 		30.3
(1.3)
A 		38
C 13.5
(-2.2)
A 		5.3
(-2.8)
A 		2.2
(-3)
A 		85
(3)
A 		83
avr 23.9
(-0.7) 		4.9
(-2.9) 		3.9
(-3) 		56.6
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 3
(-0.6)
A 		4.2
(1.1)
A 		5.5
(3)
A 		1.3
(-3)
A 		2
(-2)
A 		2.3
(-1.6)
A 		4
B 9.6
(3)
A 		1.1
(-3)
A 		2.3
(-2.2)
A 		2.1
(-2.3)
A 		3.4
(-1.4)
A 		5
(-0.2)
A 		9
C 3.6
(-2.5)
A 		27.5
(3)
A 		4.4
(-2.4)
A 		16.4
(0.4)
A 		1.6
(-3)
A 		5.3
(-2.1)
A 		26
avr 5.4
(-0.8) 		10.9
(3) 		4.1
(-1.7) 		6.6
(-0) 		2.3
(-3) 		4.2
(-1.7) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 6.3
(1.5)
A 		1.2
(-3)
A 		1.8
(-2.5)
A 		8
(3)
A 		7
B 13.1
(3)
A 		0.9
(-2.9)
A 		0.6
(-3)
A 		6.5
(-0.2)
A 		13
C 4.5
(-1.4)
A 		1.5
(-2.7)
A 		0.8
(-3)
A 		14.3
(3)
A 		14
avr 8
(1.9) 		1.2
(-2.9) 		1.1
(-3) 		9.6
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.6
(-1.5)
A 		1.5
(3)
A 		1.2
(1.5)
A 		0.3
(-3)
A 		0.6
(-1.5)
A 		0.6
(-1.5)
A 		1
B 3.3
(3)
A 		0.4
(-3)
A 		0.6
(-2.6)
A 		0.6
(-2.6)
A 		1.4
(-0.9)
A 		1.9
(0.1)
A 		3
C 1.3
(-2.4)
A 		8.4
(3)
A 		1.1
(-2.5)
A 		3.3
(-0.9)
A 		0.5
(-3)
A 		1.8
(-2)
A 		8
avr 1.7
(-0.9) 		3.4
(3) 		1
(-2.5) 		1.4
(-1.6) 		0.8
(-3) 		1.4
(-1.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180951_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3007
Sequence Type Exemplar sequence
Representative Public ID T24B8.7B NCBI
Target Description T24B8.7B /REP_DB=WormBase Gene ID /WP=CE21201 /TR=P90865 /GB=CAA92762.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063530(11), NM_063531(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063530 NCBI Caenorhabditis elegans T24B8.7b (T24B8.7) mRNA, complete cds. 11/11 A 
NM_063531 NCBI Caenorhabditis elegans T24B8.7a (T24B8.7) mRNA, complete cds. 11/11 A 
T24B8.7b ENSEMBL cdna:known chromosome:CEL140:II:9047474:9053117:-1 gene:T24B8.7 11/11 A 
T24B8.7c ENSEMBL cdna:known chromosome:CEL140:II:9047474:9053117:-1 gene:T24B8.7 11/11 A 
T24B8.7a ENSEMBL cdna:known chromosome:CEL140:II:9047474:9053117:-1 gene:T24B8.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9047470-9053114(-) 100.0 100.0
Public Domain and Genome References
Ensembl T24B8.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92762 Hypothetical protein T24B8.7b [Caenorhabditis elegans] emb|CAA90960.2| Hypothetical protein T24B8.7b [Caenorhabditis elegans] ref|NP_495931.2| T24B8.7b [Caenorhabditis elegans] 0.0
blast CAA92761 Hypothetical protein T24B8.7a [Caenorhabditis elegans] emb|CAA90959.2| Hypothetical protein T24B8.7a [Caenorhabditis elegans] ref|NP_495932.2| T24B8.7a [Caenorhabditis elegans] 0.0
blast CAE59792 Hypothetical protein CBG03252 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000449 EMBL-EBI Ubiquitin-associated domain 6.1E-9
Pfam IPR001394 EMBL-EBI Peptidase C19, ubiquitin carboxyl-terminal hydrolase family 2 1.0E-126
Pfam IPR001394 EMBL-EBI Peptidase C19, ubiquitin carboxyl-terminal hydrolase family 2 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:180951_S_AT
aaatctgacagacggtgttttaacgaaacctaacgtgattcccctgaacaaatgctcacc
tggtgaccgacattcaatttttgaacgtattatccaaatcattcggagtgtttataccgg
ccgtaacacgttcatcaagatgattcgtaacgagttccgaattcgtgaagaaatgagaaa
gacttgtgaaagaatgctccaaagccgccagacaccacgttcaatagatcaacctatgga
ctacgcgttgacaaaacagcagattatgccaccaccatgtgttgataaccagaataaccc
agcatattcttcatccggttctgttgttcagttcaagtcacttttcagttcgtatatcaa
aattataacatcattcatgcagcgatgggatcttccggatttgattgcattcctagagag
cattcgaaactttcaatggattcacgtggctacagagagtttgttgacgagcgaaattga
accgtttgcggaaacaaatcagaataagggaaaaaaaacgagagaaacagccagtgattt
aatacgagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCTGACAGACGGTGTTTTAACG 605 117 3858 Antisense
CCTAACGTGATTCCCCTGAACAAAT 318 267 3886 Antisense
AATGCTCACCTGGTGACCGACATTC 190 167 3908 Antisense
GAACGTATTATCCAAATCATTCGGA 268 347 3940 Antisense
CATTCGGAGTGTTTATACCGGCCGT 336 215 3957 Antisense
TATACCGGCCGTAACACGTTCATCA 234 661 3970 Antisense
GCATTCCTAGAGAGCATTCGAAACT 477 305 4264 Antisense
TTCAATGGATTCACGTGGCTACAGA 662 683 4289 Antisense
GTGGCTACAGAGAGTTTGTTGACGA 663 491 4303 Antisense
GACGAGCGAAATTGAACCGTTTGCG 615 375 4323 Antisense
AACAGCCAGTGATTTAATACGAGCA 475 135 4383 Antisense
Sequence Source Affymetrix Proprietary Database