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[180950_at]

Description F52C6.1 /REP_DB=WormBase Gene ID /WP=CE10804 /TR=O44822 /GB=AAB94970.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 01      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 8
(-3)
A 		26.3
(-0.6)
A 		11.7
(-2.5)
A 		53.1
(3)
P 		45
B 22.2
(-0.3)
A 		14.6
(-3)
A 		31.7
(3)
A 		15.7
(-2.6)
A 		17
C 28.2
(1.5)
A 		7.2
(-3)
A 		24.4
(0.7)
A 		35
(3)
P 		28
avr 19.5
(-1.9) 		16
(-3) 		22.6
(-0.9) 		34.6
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 48.3
(1.5)
A 		37.5
(-0.1)
A 		23.2
(-2.2)
A 		17.5
(-3)
A 		58.2
(3)
P 		56.9
(2.8)
A 		41
B 12.4
(-3)
A 		48.1
(3)
A 		43.2
(2.2)
A 		47.5
(2.9)
P 		47.8
(2.9)
A 		48
(3)
P 		36
C 8.1
(-3)
A 		16.2
(-2.2)
A 		21.1
(-1.7)
A 		27.9
(-1)
A 		46.6
(0.8)
P 		68.2
(3)
P 		60
avr 22.9
(-3) 		33.9
(-1.1) 		29.2
(-1.9) 		31
(-1.6) 		50.9
(1.8) 		57.7
(3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.9
(-3)
A 		5.7
(0.4)
A 		3.1
(-2.8)
A 		7.8
(3)
P 		5
B 7.1
(2.6)
A 		3.6
(-2.6)
A 		7.4
(3)
A 		3.3
(-3)
A 		4
C 9.3
(3)
A 		2.1
(-3)
A 		8.5
(2.3)
A 		5.9
(0.2)
P 		7
avr 6.4
(3) 		3.8
(-3) 		6.3
(2.8) 		5.7
(1.4) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 8.9
(-1)
A 		13.3
(1)
A 		5
(-2.7)
A 		4.4
(-3)
A 		17.6
(3)
P 		13.9
(1.3)
A 		13
B 4.3
(-3)
A 		16
(1.6)
A 		10.5
(-0.5)
A 		12.6
(0.3)
P 		19.4
(3)
A 		17.9
(2.4)
P 		15
C 3
(-3)
A 		4.9
(-2.4)
A 		5.4
(-2.3)
A 		5.6
(-2.2)
A 		15.1
(0.7)
P 		22.8
(3)
P 		20
avr 5.4
(-3) 		11.4
(-0.2) 		7
(-2.3) 		7.5
(-2) 		17.4
(2.6) 		18.2
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180950_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5017
Sequence Type Exemplar sequence
Representative Public ID F52C6.1 NCBI
Target Description F52C6.1 /REP_DB=WormBase Gene ID /WP=CE10804 /TR=O44822 /GB=AAB94970.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061728(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061728 NCBI Caenorhabditis elegans F52C6.1 (F52C6.1) mRNA, complete cds. 11/11 None
GENEFINDER00000005735 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1927880:1928735:1 11/11 None
F52C6.1 ENSEMBL cdna:known chromosome:CEL140:II:1927880:1928735:1 gene:F52C6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005727 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1927878-1928734(+) 100.0 100.0
Public Domain and Genome References
Ensembl F52C6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494129 F52C6.1 [Caenorhabditis elegans] 1.0E-107
blast AAC26268 Hypothetical protein F40B1.1 [Caenorhabditis elegans] ref|NP_494287.1| F40B1.1 [Caenorhabditis elegans] 2.0E-52
blast AAB94974 Hypothetical protein F52C6.8 [Caenorhabditis elegans] ref|NP_494122.1| F52C6.8 [Caenorhabditis elegans] 4.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 3.7E-19
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.7E-28
Sequence
Target Sequence 
>C. ELEGANS:180950_AT
tcgcccactttcacgaatgtatcgaagctagaaaacggcgaaaatctatacagtcccgac
gatacacatttcaacatcccatggtgtgtatcattatctcacaaaggcgacaatttggct
gtatatctttattgctcaaaatcgagaaaaactgatgtgatgtggaccattgagactaaa
ttcaacttttcaatcagggcttcgagtgggaaaagtacaacgaaactttctgtcaagatc
acagatataactggattctcgaaaaatgtgctccaaagattcgatcagtctgctgaagaa
ttttccgatgtgattattatagtggaagggcagaagttctatgttttgaagaaactcctc
gcttttcactccacatacttcaaagcgcttctccttggaaaattcgcggaagctgataaa
tccgaagtcacccttcaggacattgatcccacggattttcagtaccttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCCCACTTTCACGAATGTATCGA 619 599 43 Antisense
GGCGAAAATCTATACAGTCCCGACG 437 539 79 Antisense
AGTCCCGACGATACACATTTCAACA 417 61 94 Antisense
ATTTCAACATCCCATGGTGTGTATC 20 17 110 Antisense
TTTGGCTGTATATCTTTATTGCTCA 691 665 156 Antisense
TCAACTTTTCAATCAGGGCTTCGAG 12 317 224 Antisense
TTGAAGAAACTCCTCGCTTTTCACT 361 703 388 Antisense
TTTTCACTCCACATACTTCAAAGCG 440 675 405 Antisense
CTTCAAAGCGCTTCTCCTTGGAAAA 620 219 420 Antisense
GCTGATAAATCCGAAGTCACCCTTC 197 295 454 Antisense
GATCCCACGGATTTTCAGTACCTTT 528 413 487 Antisense
Sequence Source Affymetrix Proprietary Database