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[180948_at]

Description F52E1.6 /REP_DB=WormBase Gene ID /WP=CE04634 /TR=Q20658 /GB=AAB37040.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 56      6grp_rule_based > S5      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 295
1 2 3 4 range
A 25.6
(-3)
A 		118.7
(-0.1)
P 		219.9
(3)
P 		55.1
(-2.1)
A 		194
B 50.3
(-3)
P 		168.4
(-0.1)
P 		296.5
(3)
P 		58.4
(-2.8)
A 		246
C 78.4
(-3)
P 		119.3
(-2)
P 		320.7
(3)
P 		85.8
(-2.8)
A 		242
avr 51.4
(-3) 		135.5
(-0.8) 		279
(3) 		66.4
(-2.6) 		228

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 764
1 2 3 4 5 6 range
A 4.3
(-3)
A 		202.3
(-1.4)
P 		420.8
(0.4)
P 		671.1
(2.4)
P 		750
(3)
P 		10.1
(-3)
A 		746
B 51.4
(-3)
A 		286.7
(-1)
P 		360.7
(-0.4)
P 		643.6
(2)
P 		768.7
(3)
P 		50.7
(-3)
P 		718
C 8.5
(-3)
A 		257.8
(-0.5)
P 		292.4
(-0.2)
P 		557
(2.5)
P 		609.8
(3)
P 		70.3
(-2.4)
P 		601
avr 21.4
(-3) 		248.9
(-1) 		358
(-0.1) 		623.9
(2.3) 		709.5
(3) 		43.7
(-2.8) 		688
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 9.3
(-2.9)
A 		25.8
(-0.9)
P 		57.5
(3)
P 		8.1
(-3)
A 		49
B 16.1
(-2.6)
P 		41.6
(0.1)
P 		68.7
(3)
P 		12.4
(-3)
A 		56
C 26
(-2.3)
P 		34.3
(-1.8)
P 		111.8
(3)
P 		14.5
(-3)
A 		97
avr 17.1
(-2.5) 		33.9
(-1) 		79.3
(3) 		11.7
(-3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 312
1 2 3 4 5 6 range
A 0.8
(-3)
A 		71.9
(-1.1)
P 		91.6
(-0.6)
P 		170.2
(1.5)
P 		226.3
(3)
P 		2.4
(-3)
A 		226
B 17.9
(-3)
A 		95.4
(-1.4)
P 		87.6
(-1.6)
P 		170.5
(0.1)
P 		312.3
(3)
P 		18.9
(-3)
P 		294
C 3.1
(-3)
A 		78.7
(-0.7)
P 		74.4
(-0.8)
P 		112
(0.4)
P 		197.3
(3)
P 		23.5
(-2.4)
P 		194
avr 7.3
(-3) 		82
(-1.1) 		84.5
(-1.1) 		150.9
(0.6) 		245.3
(3) 		14.9
(-2.8) 		238
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180948_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11377
Sequence Type Exemplar sequence
Representative Public ID F52E1.6 NCBI
Target Description F52E1.6 /REP_DB=WormBase Gene ID /WP=CE04634 /TR=Q20658 /GB=AAB37040.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072763(10), NM_001028785(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072763 NCBI Caenorhabditis elegans F52E1.5 (F52E1.5) mRNA, complete cds. 10/11 A 
NM_001028785 NCBI Caenorhabditis elegans F52E1.6 (F52E1.6) mRNA, complete cds. 11/11 None
F52E1.5 ENSEMBL cdna:known chromosome:CEL140:V:8382096:8387446:1 gene:F52E1.5 10/11 A 
F52E1.6 ENSEMBL cdna:known chromosome:CEL140:V:8385860:8386178:1 gene:F52E1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8385860-8386179(+) 100.0 100.0
Public Domain and Genome References
Ensembl F52E1.5
F52E1.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM45372 Hypothetical protein F52E1.5a [Caenorhabditis elegans] ref|NP_505164.3| F52E1.5 [Caenorhabditis elegans] 0.0
blast CAE66060 Hypothetical protein CBG11273 [Caenorhabditis briggsae] 3.0E-73
blast CAE66062 Hypothetical protein CBG11275 [Caenorhabditis briggsae] 3.0E-70
blast AAQ62452 Hypothetical protein F52E1.5b [Caenorhabditis elegans] ref|NP_001023956.1| F52E1.6 [Caenorhabditis elegans] pir||F89129 protein F52E1.6 [imported] - Caenorhabditis elegans 6.0E-51
blast AAM45372 Hypothetical protein F52E1.5a [Caenorhabditis elegans] ref|NP_505164.3| F52E1.5 [Caenorhabditis elegans] 3.0E-38
Sequence
Target Sequence 
>C. ELEGANS:180948_AT
tgtttcggaacagtgatttggattgtggtggcctacgaaatggttgtgattccaatggaa
attgtgattgtgtcaatgcattccattctcacggatacaaacttttcgtcaaagtacttc
tgacattctgccatcaaacaaaatgtacaaaaacatcagacaattgttatggtcttccat
gccgagtcggaaaatgcaaatgttttgttggttctggagttggctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTTCGGAACAGTGATTTGGATTG 512 561 14 Antisense
GATTTGGATTGTGGTGGCCTACGAA 617 427 28 Antisense
GGTGGCCTACGAAATGGTTGTGATT 650 497 40 Antisense
GATTGTGTCAATGCATTCCATTCTC 559 435 79 Antisense
AATGCATTCCATTCTCACGGATACA 341 165 88 Antisense
CTCACGGATACAAACTTTTCGTCAA 92 229 101 Antisense
AAAGTACTTCTGACATTCTGCCATC 160 123 124 Antisense
CTGACATTCTGCCATCAAACAAAAT 92 239 133 Antisense
GACAATTGTTATGGTCTTCCATGCC 33 365 172 Antisense
TGGTCTTCCATGCCGAGTCGGAAAA 569 549 183 Antisense
GTTTTGTTGGTTCTGGAGTTGGCTC 485 447 215 Antisense
Sequence Source Affymetrix Proprietary Database