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[180947_at] 7TM chemoreceptor, srw family

Description C03A7.3 /REP_DB=WormBase Gene ID /WP=CE07861 /TR=O16503 /GB=AAB66000.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 03      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 18
(-2.6)
A 		10.3
(-3)
A 		17.5
(-2.6)
A 		115.7
(3)
P 		105
B 15.7
(-2.1)
A 		10.7
(-2.4)
A 		2.1
(-3)
A 		91.8
(3)
P 		90
C 21.8
(-2.2)
A 		4.3
(-3)
A 		5.9
(-2.9)
A 		127.9
(3)
P 		124
avr 18.5
(-2.4) 		8.4
(-3) 		8.5
(-3) 		111.8
(3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 40.5
(3)
A 		1
(-3)
A 		28.8
(1.2)
A 		5.6
(-2.3)
A 		18.3
(-0.4)
P 		1.7
(-2.9)
A 		40
B 9
(1.9)
A 		1.6
(-3)
A 		4.1
(-1.3)
A 		2.1
(-2.7)
A 		10.6
(3)
A 		6.5
(0.3)
A 		9
C 17.8
(-0.4)
A 		35.3
(2.4)
A 		2.2
(-3)
A 		2.6
(-2.9)
A 		2.4
(-3)
A 		38.9
(3)
P 		37
avr 22.4
(3) 		12.6
(-0.1) 		11.7
(-0.4) 		3.4
(-3) 		10.4
(-0.8) 		15.7
(0.9) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 6.5
(-1.2)
A 		2.2
(-3)
A 		4.6
(-2)
A 		16.9
(3)
P 		15
B 5
(-1.6)
A 		2.6
(-2.3)
A 		0.5
(-3)
A 		19.6
(3)
P 		19
C 7.2
(-1.2)
A 		1.2
(-3)
A 		2
(-2.8)
A 		21.6
(3)
P 		20
avr 6.2
(-1.6) 		2
(-3) 		2.4
(-2.9) 		19.4
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 7.5
(3)
A 		0.4
(-3)
A 		6.3
(2)
A 		1.4
(-2.2)
A 		5.5
(1.3)
P 		0.4
(-3)
A 		7
B 3.1
(1.1)
A 		0.5
(-3)
A 		1
(-2.2)
A 		0.6
(-2.8)
A 		4.3
(3)
A 		2.4
(0)
A 		4
C 6.6
(-0.1)
A 		10.8
(1.9)
A 		0.5
(-3)
A 		0.5
(-3)
A 		0.8
(-2.9)
A 		13
(3)
P 		13
avr 5.7
(3) 		3.9
(0.8) 		2.6
(-0.8) 		0.8
(-3) 		3.5
(0.3) 		5.3
(2.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180947_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15348
Sequence Type Exemplar sequence
Representative Public ID C03A7.3 NCBI
Target Description C03A7.3 /REP_DB=WormBase Gene ID /WP=CE07861 /TR=O16503 /GB=AAB66000.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071984(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071984 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-140) (srw-140) mRNA, complete cds. 11/11 None
C03A7.3 ENSEMBL cdna:known chromosome:CEL140:V:5165538:5167053:1 gene:C03A7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5165537-5166795(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-140
Ensembl C03A7.3
Entrez Gene 182135 Entrez gene
SwissProt O16503 EMBL-EBI
WormBase CE34521 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66000 Serpentine receptor, class w protein 140 [Caenorhabditis elegans] ref|NP_504385.2| Serpentine Receptor, class W family member (srw-140) [Caenorhabditis elegans] 0.0
blast AAN73868 Serpentine receptor, class w protein 139 [Caenorhabditis elegans] ref|NP_503813.2| Serpentine Receptor, class W family member (srw-139) [Caenorhabditis elegans] 1.0E-136
blast AAG24167 Serpentine receptor, class w protein 136 [Caenorhabditis elegans] ref|NP_503821.2| Serpentine Receptor, class W family member (srw-136) [Caenorhabditis elegans] 4.0E-76
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504385.2 6 73-95,99-121,158-180,229-251,276-298,313-335
C03A7.3 6 73-95,99-121,158-180,229-251,276-298,313-335
Sequence
Target Sequence 
>C. ELEGANS:180947_AT
ttttctatacacccattgtttccaatcaggctcatatgcatgggttctttttaacttagt
gctggaagctctgagagattattcacgacgttgttccacttggctctgcttatcaatagc
tttacttagaattcttgtcatgaaaaatcctcttaatcaaaagtatatgaggctggttaa
ccctattggagcgttttatgcaatatctataatggttttagttaacgttcctatcactgt
gtttaatttgatgaaatatacaattaagggaatcatacgaaaaagcttatgctttccaaa
tggaagagtaacatattatatggattttgtcgaagcgtttacaaataatgatggggctct
tcttaaagtcgctacgacaagcaatgcaattatgacgaatattattccatgctttgtata
tcctattttcacactttttcttgtgtcagaactcaaaaaagtgaataaaaatagacaaag
cctatcatctacgaagaactcgaccgaatcacagaagacaactcgtttagttctactcct
cacggcaatgtttttcattgccgagtttccacttggcgtgagcacgtttctgacttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCTATACACCCATTGTTTCCAA 447 675 312 Antisense
TTGTTTCCAATCAGGCTCATATGCA 422 707 327 Antisense
TCCACTTGGCTCTGCTTATCAATAG 225 589 406 Antisense
GAGGCTGGTTAACCCTATTGGAGCG 628 399 480 Antisense
GTTAACGTTCCTATCACTGTGTTTA 11 447 532 Antisense
GATGGGGCTCTTCTTAAAGTCGCTA 63 407 661 Antisense
ATTCCATGCTTTGTATATCCTATTT 611 7 715 Antisense
GACAACTCGTTTAGTTCTACTCCTC 638 365 828 Antisense
TACTCCTCACGGCAATGTTTTTCAT 350 647 845 Antisense
CATTGCCGAGTTTCCACTTGGCGTG 100 215 867 Antisense
TGGCGTGAGCACGTTTCTGACTTAT 271 545 885 Antisense
Sequence Source Affymetrix Proprietary Database