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[180946_at]

Description C45G7.3 /REP_DB=WormBase Gene ID /WP=CE24850 /TR=O76357 /GB=AAC19179.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 49      6grp_total > 87      4grp_total > 02      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4008
1 2 3 4 range
A 269.2
(-2.9)
P 		217.8
(-2.9)
P 		184.2
(-3)
P 		4165.1
(3)
P 		3981
B 281.6
(-2.9)
P 		232.6
(-2.9)
P 		198.3
(-3)
P 		4135.1
(3)
P 		3937
C 257.1
(-2.8)
P 		267.2
(-2.8)
P 		156.7
(-3)
P 		3867.9
(3)
P 		3711
avr 269.3
(-2.9) 		239.2
(-2.9) 		179.7
(-3) 		4056
(3) 		3876

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13508
1 2 3 4 5 6 range
A 627.6
(-3)
P 		1031
(-2.8)
P 		1250.5
(-2.7)
P 		2510.3
(-2.2)
P 		4999.9
(-1)
P 		14017.5
(3)
P 		13390
B 549.8
(-3)
P 		1326.8
(-2.6)
P 		1365.1
(-2.5)
P 		2495.1
(-1.9)
P 		5152.5
(-0.4)
P 		11238.2
(3)
P 		10688
C 509.6
(-3)
P 		1015.9
(-2.8)
P 		1357
(-2.6)
P 		2540.2
(-2)
P 		5711.6
(-0.5)
P 		12975.4
(3)
P 		12466
avr 562.3
(-3) 		1124.6
(-2.7) 		1324.2
(-2.6) 		2515.2
(-2) 		5288
(-0.7) 		12743.7
(3) 		12181
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 835
1 2 3 4 range
A 98
(-2.5)
P 		47.3
(-3)
P 		48.1
(-3)
P 		609.7
(3)
P 		562
B 89.8
(-2.7)
P 		57.5
(-2.9)
P 		45.9
(-3)
P 		881.2
(3)
P 		835
C 85.1
(-2.7)
P 		76.8
(-2.8)
P 		54.6
(-3)
P 		652.2
(3)
P 		598
avr 91
(-2.6) 		60.5
(-2.9) 		49.5
(-3) 		714.4
(3) 		665

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4228
1 2 3 4 5 6 range
A 115.7
(-3)
P 		366.7
(-2.5)
P 		272.3
(-2.7)
P 		636.7
(-2.1)
P 		1508.7
(-0.5)
P 		3412.8
(3)
P 		3297
B 191.3
(-3)
P 		441.6
(-2.6)
P 		331.5
(-2.8)
P 		660.9
(-2.3)
P 		2093.4
(-0.1)
P 		4190.7
(3)
P 		3999
C 188.9
(-3)
P 		310
(-2.8)
P 		345.4
(-2.8)
P 		510.8
(-2.5)
P 		1848.2
(-0.6)
P 		4343.6
(3)
P 		4155
avr 165.3
(-3) 		372.8
(-2.7) 		316.4
(-2.8) 		602.8
(-2.3) 		1816.8
(-0.4) 		3982.4
(3) 		3817
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180946_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10919
Sequence Type Exemplar sequence
Representative Public ID C45G7.3 NCBI
Target Description C45G7.3 /REP_DB=WormBase Gene ID /WP=CE24850 /TR=O76357 /GB=AAC19179.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067805(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067805 NCBI Caenorhabditis elegans C45G7.3 (C45G7.3) mRNA, complete cds. 11/11 None
SNAP00000040034 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2464483:2468808:1 11/11 None
GENEFINDER00000040039 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2464483:2465396:1 11/11 None
C45G7.3 ENSEMBL cdna:known chromosome:CEL140:IV:2464480:2465396:1 gene:C45G7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2464488-2465402(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C45G7.3
Entrez Gene 177033 Entrez gene
SwissProt O76357 EMBL-EBI
WormBase CE24850 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500206 C45G7.3 [Caenorhabditis elegans] gb|AAC19179.1| Hypothetical protein C45G7.3 [Caenorhabditis elegans] 4.0E-84
blast NP_500206 C45G7.3 [Caenorhabditis elegans] gb|AAC19179.1| Hypothetical protein C45G7.3 [Caenorhabditis elegans] 4.0E-79
blast NP_500207 C45G7.2 [Caenorhabditis elegans] gb|AAC19181.1| Hypothetical protein C45G7.2 [Caenorhabditis elegans] 1.0E-78
blast NP_500207 C45G7.2 [Caenorhabditis elegans] gb|AAC19181.1| Hypothetical protein C45G7.2 [Caenorhabditis elegans] 2.0E-72
blast NP_001024594 F22A3.6a [Caenorhabditis elegans] gb|AAA83197.1| Hypothetical protein F22A3.6a [Caenorhabditis elegans] 4.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR008597 EMBL-EBI Destabilase 5.5E-74
Pfam IPR008597 EMBL-EBI Destabilase 2.6E-72
Pfam IPR008597 EMBL-EBI Destabilase 8.6E-79
Sequence
Target Sequence 
>C. ELEGANS:180946_AT
ggtttttctgactattgcggtcgcctacgcctccgccgattgcctccattgcatctgtat
gagagaatccggatgtaagccgatcggttgtaacatggacgtcggatccctttcttgtgg
atattatcagatcaaactcccctactacgaggactgcggtcagcctaccaagaaatccgg
agaaacaactgaagccgcgtggaagaggtgcgcgaatgatcttagctgtgctactacttg
tgttgagaactactacaaccgctacaagagtcaatgtgctggaactggacagggagcatg
cgaagtgatggctcgtaaccacaacggagggccacaaggatgcaagcactccggaactct
gggatact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTTTTCTGACTATTGCGGTCGCC 27 507 30 Antisense
ATTGCCTCCATTGCATCTGTATGAG 700 5 68 Antisense
GTAACATGGACGTCGGATCCCTTTC 156 461 119 Antisense
ATTATCAGATCAAACTCCCCTACTA 55 15 152 Antisense
CCCCTACTACGAGGACTGCGGTCAG 370 261 168 Antisense
GACTGCGGTCAGCCTACCAAGAAAT 224 375 181 Antisense
GGTGCGCGAATGATCTTAGCTGTGC 623 501 236 Antisense
AGCTGTGCTACTACTTGTGTTGAGA 451 81 253 Antisense
AGTGATGGCTCGTAACCACAACGGA 183 57 333 Antisense
GGAGGGCCACAAGGATGCAAGCACT 376 517 355 Antisense
AAGCACTCCGGAACTCTGGGATACT 678 151 373 Antisense
Sequence Source Affymetrix Proprietary Database