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[180945_s_at]

Description F49C12.7 /REP_DB=WormBase Gene ID /WP=CE03367 /TR=Q20584 /GB=CAA92511.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      4grp_highest_8_8 > 43      4grp_high_8_8 > 32      6grp_highest_nonorm > 24      6grp_total > 52      4grp_total > 55      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1812
1 2 3 4 range
A 1810.5
(3)
P 		269.1
(-2.9)
P 		424.5
(-2.3)
P 		245.2
(-3)
P 		1565
B 1764.1
(3)
P 		243.9
(-3)
P 		535.4
(-1.8)
P 		284.1
(-2.8)
P 		1520
C 2055.6
(3)
P 		249.7
(-3)
P 		453.2
(-2.3)
P 		265.6
(-2.9)
P 		1806
avr 1876.7
(3) 		254.2
(-3) 		471
(-2.2) 		265
(-3) 		1623

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4594
1 2 3 4 5 6 range
A 3050.8
(-0.7)
P 		3482.4
(0)
P 		5315.1
(3)
P 		3396.9
(-0.1)
P 		2546.6
(-1.5)
P 		1612.5
(-3)
P 		3703
B 2902.7
(-1.5)
P 		3200
(-1.1)
P 		6206.1
(3)
P 		3377.6
(-0.9)
P 		2493.9
(-2.1)
P 		1826.2
(-3)
P 		4380
C 2780.5
(-0.9)
P 		3544.1
(0.5)
P 		4830
(3)
P 		3487.6
(0.4)
P 		2410.4
(-1.6)
P 		1688.2
(-3)
P 		3142
avr 2911.3
(-1.1) 		3408.8
(-0.3) 		5450.4
(3) 		3420.7
(-0.3) 		2483.6
(-1.8) 		1709
(-3) 		3741
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 645
1 2 3 4 range
A 659.2
(3)
P 		58.4
(-2.8)
P 		111
(-2.3)
P 		35.9
(-3)
P 		623
B 562.6
(3)
P 		60.2
(-3)
P 		124.1
(-2.2)
P 		60.5
(-3)
P 		502
C 680.4
(3)
P 		71.8
(-2.7)
P 		157.9
(-1.9)
P 		44.8
(-3)
P 		636
avr 634.1
(3) 		63.5
(-2.8) 		131
(-2.1) 		47.1
(-3) 		587

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1114
1 2 3 4 5 6 range
A 562.4
(-1.8)
P 		1238.5
(3)
P 		1157.5
(2.4)
P 		861.5
(0.3)
P 		768.5
(-0.3)
P 		392.6
(-3)
P 		846
B 1010
(-0.6)
P 		1065.1
(-0.2)
P 		1507
(3)
P 		894.6
(-1.4)
P 		1013.3
(-0.6)
P 		681
(-3)
P 		826
C 1030.6
(1.2)
P 		1081.4
(1.7)
P 		1229.3
(3)
P 		701.4
(-1.8)
P 		780
(-1.1)
P 		565.1
(-3)
P 		664
avr 867.7
(-0.4) 		1128.3
(1.6) 		1297.9
(3) 		819.2
(-0.8) 		853.9
(-0.5) 		546.2
(-3) 		752
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 180945_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9870
Sequence Type Exemplar sequence
Representative Public ID F49C12.7 NCBI
Target Description F49C12.7 /REP_DB=WormBase Gene ID /WP=CE03367 /TR=Q20584 /GB=CAA92511.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069229(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069229 NCBI Caenorhabditis elegans F49C12.7 (F49C12.7) mRNA, complete cds. 11/11 None
SNAP00000032695 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9309269:9311115:-1 11/11 None
GENEFINDER00000032711 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9309269:9311115:-1 11/11 None
F49C12.7 ENSEMBL cdna:known chromosome:CEL140:IV:9309157:9312904:-1 gene:F49C12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9309274-9312910(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F49C12.7
Entrez Gene 177751 Entrez gene
SwissProt Q20584 EMBL-EBI
WormBase CE03367 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92511 Hypothetical protein F49C12.7 [Caenorhabditis elegans] ref|NP_501630.1| F49C12.7 [Caenorhabditis elegans] 0.0
blast CAE73595 Hypothetical protein CBG21079 [Caenorhabditis briggsae] 1.0E-170
blast CAE73595 Hypothetical protein CBG21079 [Caenorhabditis briggsae] 1.0E-169
blast CAB04728 Hypothetical protein T16G1.4 [Caenorhabditis elegans] ref|NP_506236.1| T16G1.4 [Caenorhabditis elegans] 1.0E-28
Protein Domains
Database ID Description E-Value
Pfam IPR004119 EMBL-EBI Protein of unknown function DUF227 1.1E-6
Pfam IPR004119 EMBL-EBI Protein of unknown function DUF227 1.1E-6
Sequence
Target Sequence 
>C. ELEGANS:180945_S_AT
ttatcaggactttattctccgtttaaagattggttcctccagttgaataacgggctaatg
gctctcttccccgacccagaaatgcaaaaattgactgaaacctttgcaacaactcttcct
gaaataataacagctgatgaattggatttagttccatgcaaacttggaatgaagaaggta
tttgtgcatggtgatttatggtcagcaaatattatgtggaatcaagaaggacatttgaag
aagttgatcgattttcagatgattcattttggtttggctgcaactgatttggcacgtgtg
atgaatacttgtttaagtccagaagaacgtcatgctaataaggaaaagtatcttaaacat
tactttgactgtcttacaaaacattgcaaagaagatgatcatccagtgccctttgattta
gagcagctaacaaccacctacaacttggcatatcctcgagtctcagcctacctgctccct
gctctgacagcagttctagaaaaagttgtctcaatgccaaacattcctgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATCAGGACTTTATTCTCCGTTTA 477 679 727 Antisense
TCCGTTTAAAGATTGGTTCCTCCAG 310 591 744 Antisense
GGTTCCTCCAGTTGAATAACGGGCT 381 503 758 Antisense
ATAACGGGCTAATGGCTCTCTTCCC 361 23 773 Antisense
ACCTTTGCAACAACTCTTCCTGAAA 98 87 826 Antisense
GCAACTGATTTGGCACGTGTGATGA 649 319 1006 Antisense
TGATCATCCAGTGCCCTTTGATTTA 449 565 1122 Antisense
TAGAGCAGCTAACAACCACCTACAA 476 651 1145 Antisense
ACCTACAACTTGGCATATCCTCGAG 383 87 1162 Antisense
CTCCCTGCTCTGACAGCAGTTCTAG 452 231 1201 Antisense
GTCTCAATGCCAAACATTCCTGCAA 496 467 1234 Antisense
Sequence Source Affymetrix Proprietary Database