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[180943_at]

Description T19E7.1 /REP_DB=WormBase Gene ID /WP=CE04984 /TR=Q22591 /GB=AAA83595.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 71      6grp_total > 52      4grp_total > 02      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 592
1 2 3 4 range
A 245.1
(-2.3)
P 		223.8
(-2.5)
P 		178.4
(-3)
P 		770.7
(3)
P 		592
B 280.5
(-2.1)
P 		233.9
(-3)
P 		288.3
(-1.9)
P 		544.6
(3)
P 		311
C 258
(-2.2)
P 		189.4
(-3)
P 		238.3
(-2.4)
P 		695.7
(3)
P 		506
avr 261.2
(-2.4) 		215.7
(-3) 		235
(-2.7) 		670.3
(3) 		455

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 552
1 2 3 4 5 6 range
A 231.8
(-1.9)
P 		260.4
(-1.6)
P 		686.3
(3)
P 		427.4
(0.2)
P 		258
(-1.7)
P 		134.7
(-3)
P 		552
B 281.1
(-1.5)
P 		464.2
(2)
P 		517.4
(3)
P 		275.9
(-1.6)
P 		269
(-1.8)
P 		205.6
(-3)
P 		312
C 266.7
(-2.4)
P 		460.6
(2.6)
P 		476
(3)
P 		413.8
(1.4)
P 		255.7
(-2.6)
P 		241.4
(-3)
P 		235
avr 259.9
(-1.9) 		395.1
(0.3) 		559.9
(3) 		372.4
(-0.1) 		260.9
(-1.9) 		193.9
(-3) 		366
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 89.2
(0.9)
P 		48.6
(-2.8)
P 		46.6
(-3)
P 		112.8
(3)
P 		66
B 89.4
(0.3)
P 		57.8
(-3)
P 		66.8
(-2.1)
P 		116.1
(3)
P 		58
C 85.4
(-0)
P 		54.5
(-3)
P 		83.1
(-0.3)
P 		117.3
(3)
P 		63
avr 88
(0.3) 		53.6
(-3) 		65.5
(-1.8) 		115.4
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 42.7
(-2.5)
P 		92.6
(0.1)
P 		149.5
(3)
P 		108.4
(0.9)
P 		77.8
(-0.7)
P 		32.8
(-3)
P 		117
B 97.8
(-1.2)
P 		154.5
(3)
P 		125.6
(0.9)
P 		73.1
(-3)
P 		109.3
(-0.3)
P 		76.7
(-2.7)
P 		81
C 98.8
(-1.2)
P 		140.6
(3)
P 		121.2
(1.1)
P 		83.2
(-2.8)
P 		82.7
(-2.8)
P 		80.8
(-3)
P 		60
avr 79.8
(-1.6) 		129.2
(2.7) 		132.1
(3) 		88.2
(-0.8) 		89.9
(-0.7) 		63.4
(-3) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180943_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10896
Sequence Type Exemplar sequence
Representative Public ID T19E7.1 NCBI
Target Description T19E7.1 /REP_DB=WormBase Gene ID /WP=CE04984 /TR=Q22591 /GB=AAA83595.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068442(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068442 NCBI Caenorhabditis elegans T19E7.1 (T19E7.1) mRNA, complete cds. 11/11 None
SNAP00000009627 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5652904:5655897:1 11/11 None
T19E7.1 ENSEMBL cdna:known chromosome:CEL140:IV:5653972:5654988:1 gene:T19E7.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000009633 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5653977-5654943(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T19E7.1
Entrez Gene 177344 Entrez gene
SwissProt Q22591 EMBL-EBI
WormBase CE04984 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83595 Hypothetical protein T19E7.1 [Caenorhabditis elegans] ref|NP_500843.1| T19E7.1 [Caenorhabditis elegans] 1.0E-99
blast CAE72672 Hypothetical protein CBG19888 [Caenorhabditis briggsae] 3.0E-92
blast AAA83595 Hypothetical protein T19E7.1 [Caenorhabditis elegans] ref|NP_500843.1| T19E7.1 [Caenorhabditis elegans] 2.0E-70
blast CAE72672 Hypothetical protein CBG19888 [Caenorhabditis briggsae] 4.0E-67
blast NP_999853 dermacan [Danio rerio] dbj|BAD12390.1| dermacan [Danio rerio] 1.0E-14
blast NP_999853 dermacan [Danio rerio] dbj|BAD12390.1| dermacan [Danio rerio] 1.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 5.0E-17
Pfam IPR001304 EMBL-EBI C-type lectin 1.7E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000009627 2 20-42,62-84
Sequence
Target Sequence 
>C. ELEGANS:180943_AT
tcaataccgtagtcattcctagccctctaaaatcttcatatcaatctattgctggacaac
gtgcaataaatctcgatgtcaacgtgcgtctactgactgtgttagctcttcaacaaagtg
gctggcaactatacgaagatcactggtataagatgtttgaaaccgacgtaatgtggattc
cagcagaaaatgtgtgtagatcaatgggagggcacttggttagcatcaaggatgaatccg
aaaacctatttgtacacaaactaagaaagaagaacaatatttggattggcctcaacaagc
taaatgatacattccacgtgtacaagtggtctgatggttcggaagccgattatctcaact
gggcatcttcacagccaaatgagccagatgttgattgtgcctacatggcatttcatcaag
aacaaagaggcacttggtttgattacggttgccgtgaaatgttgccaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATACCGTAGTCATTCCTAGCCC 616 629 50 Antisense
CCTAGCCCTCTAAAATCTTCATATC 542 267 67 Antisense
AAATCTCGATGTCAACGTGCGTCTA 215 117 117 Antisense
GTGCGTCTACTGACTGTGTTAGCTC 298 479 133 Antisense
ATGGGAGGGCACTTGGTTAGCATCA 41 51 253 Antisense
AGTGGTCTGATGGTTCGGAAGCCGA 399 59 374 Antisense
AAGCCGATTATCTCAACTGGGCATC 134 149 392 Antisense
GGGCATCTTCACAGCCAAATGAGCC 171 493 410 Antisense
TGAGCCAGATGTTGATTGTGCCTAC 84 571 429 Antisense
GAGGCACTTGGTTTGATTACGGTTG 160 405 476 Antisense
ACGGTTGCCGTGAAATGTTGCCACA 684 95 494 Antisense
Sequence Source Affymetrix Proprietary Database