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[180942_at]

Description C31H1.7 /REP_DB=WormBase Gene ID /WP=CE04127 /TR=Q18342 /GB=AAA83611.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 18.7
(0.7)
A 		13.1
(-0.6)
A 		2.2
(-3)
A 		29
(3)
A 		27
B 11.9
(-3)
A 		33.1
(3)
A 		11.8
(-3)
A 		28.2
(1.6)
A 		21
C 31.5
(-0.6)
A 		6.9
(-3)
A 		14.4
(-2.3)
A 		68.1
(3)
P 		61
avr 20.7
(-0.9) 		17.7
(-1.5) 		9.5
(-3) 		41.8
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 29.2
(2.2)
A 		33.5
(3)
A 		26.6
(1.7)
A 		2.5
(-3)
A 		3.7
(-2.8)
A 		14.2
(-0.7)
A 		31
B 1.2
(-3)
A 		7.6
(-0.9)
A 		8.6
(-0.6)
A 		19.2
(2.8)
A 		19.8
(3)
A 		17.3
(2.2)
A 		19
C 3.1
(-3)
A 		27.6
(0.4)
A 		25.1
(0)
A 		46.9
(3)
A 		19.2
(-0.8)
A 		17
(-1.1)
A 		44
avr 11.2
(-3) 		22.9
(3) 		20.1
(1.6) 		22.9
(3) 		14.2
(-1.5) 		16.2
(-0.4) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 6.8
(3)
A 		2.8
(-0.9)
A 		0.6
(-3)
A 		4.2
(0.5)
A 		6
B 3.8
(-1.8)
A 		8.2
(3)
A 		2.7
(-3)
A 		6
(0.6)
A 		6
C 10.4
(2.3)
A 		2
(-3)
A 		5
(-1.1)
A 		11.5
(3)
P 		10
avr 7
(2.7) 		4.3
(-1) 		2.8
(-3) 		7.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 5.4
(-0.5)
A 		11.9
(3)
A 		5.8
(-0.2)
A 		0.6
(-3)
A 		1.1
(-2.7)
A 		3.5
(-1.5)
A 		11
B 0.4
(-3)
A 		2.5
(-1.3)
A 		2.1
(-1.7)
A 		5.1
(0.7)
A 		8
(3)
A 		6.5
(1.8)
A 		8
C 1.1
(-3)
A 		8.4
(2.3)
A 		6.4
(0.8)
A 		9.4
(3)
A 		6.2
(0.7)
A 		5.7
(0.3)
A 		8
avr 2.3
(-3) 		7.6
(3) 		4.8
(-0.2) 		5
(0.1) 		5.1
(0.2) 		5.2
(0.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 180942_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10909
Sequence Type Exemplar sequence
Representative Public ID C31H1.7 NCBI
Target Description C31H1.7 /REP_DB=WormBase Gene ID /WP=CE04127 /TR=Q18342 /GB=AAA83611.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068466(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068466 NCBI Caenorhabditis elegans C31H1.7 (C31H1.7) mRNA, complete cds. 11/11 None
C31H1.7 ENSEMBL cdna:known chromosome:CEL140:IV:5808565:5810288:-1 gene:C31H1.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5808570-5810294(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C31H1.7
Entrez Gene 183099 Entrez gene
SwissProt Q18342 EMBL-EBI
WormBase CE04127 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83611 Hypothetical protein C31H1.7 [Caenorhabditis elegans] ref|NP_500867.1| C31H1.7 [Caenorhabditis elegans] 2.0E-49
Sequence
Target Sequence 
>C. ELEGANS:180942_AT
tcaacagattccagcaatggatggatacatttttaatgcttgaattgcagtggttcttga
tatatgccaatgtcgctaatcaaatgattgtctatggatgttgtcaaatgtcaaaaaaaa
cttcaaatgaaactccaaaggtgttcctgatgttgggtcatttttttgtgagtctgaaat
atcctggcgccactgaaacaaaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACAGATTCCAGCAATGGATGGA 191 629 35 Antisense
ATGCTTGAATTGCAGTGGTTCTTGA 540 41 70 Antisense
GGTTCTTGATATATGCCAATGTCGC 215 507 86 Antisense
ATGCCAATGTCGCTAATCAAATGAT 420 41 98 Antisense
GATTGTCTATGGATGTTGTCAAATG 594 433 120 Antisense
GAAACTCCAAAGGTGTTCCTGATGT 577 355 163 Antisense
GGTGTTCCTGATGTTGGGTCATTTT 244 501 174 Antisense
GTTGGGTCATTTTTTTGTGAGTCTG 111 437 186 Antisense
GTGAGTCTGAAATATCCTGGCGCCA 551 481 202 Antisense
GAAATATCCTGGCGCCACTGAAACA 675 361 210 Antisense
ATCCTGGCGCCACTGAAACAAAAAA 276 39 215 Antisense
Sequence Source Affymetrix Proprietary Database